RNA id: TCONS_00047187


Basic Information

Item Value
RNA id TCONS_00047187
length 804
lncRNA type antisense_over
GC content 0.48
exon number 6
gene id XLOC_023448
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22878941 ~ 23218030 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTCTATTCACTCTGAGAGGCGCTCAAACCGGAGGTTCAGTAAAGGAATAATAGAGGAGGATAAAGACCGCGATCTGTAGCGTCGGTCACTTAAGTAAGGTTTGCTGTACTCTCCTGTGTACAGAGTGCCCATGCCAAGATCCTGCTGCTGTACCTTTAGCCGTGACGAGTCAGCCCCTGCGCCAGCTGTGCCCATGGGGCAGCATCAGTCGTAACAAGAGTCTGTGTGACTGTTTCAGCGCAGCCCCATTGTGGTGTTAGAGGATAATAACACTCAGTTTCTTTTTGTCAGTGTGTTTTGCTGGATGATAAACACAGGGGAGGAAGGACCAGAGAAGGAGCTGAGGCTTGAAGAGGctctgggggaaactggagcactctgAAGAAACCattgcaaacacagagagaacatgtaaactccacacagaaaggccttcTAGTCCAGCTGAGATTCAAACCAACGATCTTTATTCTCTGTGGCAGtaatgctaaccacttagccaccatgccGGCTGAGAGAAGGAAAGAGAGAAATAGGACGTCTGACCAATACGAATGagtgaactgtacctttaagctAATATAATGAAGGCATGTCTGCTGGTTTGGGAGTGGACCTGAAGCGGGTCAGTGGGAGAAAGAGCCATGTGGTTTGGGGACTTGACCTGTGCACGATTAAGAAAAAAACCTCATAAAAAATATCAAACCTTTGACCATCGCAAGAAAAGGTCTGCAAGGGATGGAACACACACTTTGGGAAAGCTGGCACGTTTTCAATGGGACTCCGCCAGCCGGCCTGTCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046379 lncRNA downstream 57852 23078740 ~ 23087895 (-) False XLOC_023448
TCONS_00046378 lncRNA downstream 66170 23024880 ~ 23079577 (-) False XLOC_023448
TCONS_00046377 lncRNA downstream 153544 22969054 ~ 22992203 (-) False XLOC_023448
TCONS_00047183 lncRNA downstream 206609 22922768 ~ 22939138 (-) False XLOC_023448
TCONS_00046857 lncRNA downstream 222686 22878941 ~ 22923061 (-) False XLOC_023448
TCONS_00047188 lncRNA upstream 165082 23383112 ~ 23632901 (-) False XLOC_023451
TCONS_00047189 lncRNA upstream 248404 23466434 ~ 23642626 (-) False XLOC_023451
TCONS_00047190 lncRNA upstream 283914 23501944 ~ 23642626 (-) False XLOC_023451
TCONS_00047191 lncRNA upstream 371445 23589475 ~ 23642626 (-) False XLOC_023451
TCONS_00046387 lncRNA upstream 371715 23589745 ~ 23633052 (-) False XLOC_023451
TCONS_00046375 mRNA downstream 389181 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046374 mRNA downstream 389239 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046368 mRNA downstream 443730 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046369 mRNA downstream 611788 22122237 ~ 22533959 (-) False XLOC_023444
TCONS_00046364 mRNA downstream 1042162 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046384 mRNA upstream 23414 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA upstream 23414 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA upstream 24284 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046390 mRNA upstream 428614 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA upstream 429756 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046372 other downstream 773647 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 836689 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1047984 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 1177631 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 1182579 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046386 other upstream 55212 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 753026 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 884691 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 917872 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 917898 24135928 ~ 24146875 (-) True XLOC_023462

Expression Profile

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