RNA id: TCONS_00047192


Basic Information

Item Value
RNA id TCONS_00047192
length 274
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id XLOC_023461
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 24095316 ~ 24098879 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGAAGTTTTATGAGATCttcaaaagGACAGGAAGCGGGCTTGAAGGTCTCACACTGCAAACACTGGCCGCTGAGGAAGTCACTGTATGATGAACACGGGTATCCCGTAAGACTGCAGGTGCGATTCAGAGAGCACAGCACATCTACAAACTGGGCATCGGTTGGATCGAGACGTTCCTCAGGCGAAACACTGGCAAACATTGGCCCTGCTGGATCCAGACCTACAGTAGACAAGTAAAGCTTAATTTAGTAAGCATGATTAACtaactgagg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046860 lncRNA downstream 338019 23755234 ~ 23757297 (-) True XLOC_023454
TCONS_00046859 lncRNA downstream 342741 23748335 ~ 23752575 (-) False XLOC_023454
TCONS_00046389 lncRNA downstream 452411 23599781 ~ 23642905 (-) True XLOC_023451
TCONS_00047191 lncRNA downstream 452690 23589475 ~ 23642626 (-) False XLOC_023451
TCONS_00046410 lncRNA upstream 12348 24111222 ~ 24114884 (-) False XLOC_023462
TCONS_00046418 lncRNA upstream 68096 24166970 ~ 24168462 (-) True XLOC_023463
TCONS_00046423 lncRNA upstream 317450 24416324 ~ 24451847 (-) False XLOC_023466
TCONS_00047194 lncRNA upstream 317450 24416324 ~ 24456346 (-) False XLOC_023466
TCONS_00046424 lncRNA upstream 317450 24416324 ~ 24503022 (-) False XLOC_023466
TCONS_00046404 mRNA downstream 34684 24036195 ~ 24060632 (-) False XLOC_023460
TCONS_00046405 mRNA downstream 34856 24052745 ~ 24060460 (-) True XLOC_023460
TCONS_00046403 mRNA downstream 56516 24035863 ~ 24038800 (-) False XLOC_023460
TCONS_00046402 mRNA downstream 96419 23988970 ~ 23998897 (-) True XLOC_023459
TCONS_00046399 mRNA downstream 120757 23971056 ~ 23974559 (-) False XLOC_023458
TCONS_00046406 mRNA upstream 2937 24101811 ~ 24111674 (-) False XLOC_023462
TCONS_00046407 mRNA upstream 2937 24101811 ~ 24118451 (-) False XLOC_023462
TCONS_00046408 mRNA upstream 2940 24101814 ~ 24114217 (-) False XLOC_023462
TCONS_00046411 mRNA upstream 19319 24118193 ~ 24162930 (-) False XLOC_023462
TCONS_00046412 mRNA upstream 21898 24120772 ~ 24146875 (-) False XLOC_023462
TCONS_00046400 other downstream 118031 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 821957 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046372 other downstream 1723216 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 1786258 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 1997553 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046409 other upstream 3847 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 37028 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 37054 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046441 other upstream 909443 25008317 ~ 25024023 (-) False XLOC_023476
TCONS_00046479 other upstream 2260365 26359239 ~ 26362471 (-) False XLOC_023496

Expression Profile

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