Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00046410 |
| length | 775 |
| lncRNA type | retained_intron |
| GC content | 0.49 |
| exon number | 2 |
| gene id | XLOC_023462 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 24101811 ~ 24163201 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0016592 | mediator complex | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003712 | transcription coregulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050306-55 | Predicted to enable DNA binding activity and transcription coregulator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of mediator complex. |
| ensembl_id | ENSDART00000144664 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00047193 | lncRNA | downstream | 12343 | 24095316 ~ 24098879 (-) | True | XLOC_023461 |
| TCONS_00047192 | lncRNA | downstream | 12348 | 24095316 ~ 24098874 (-) | False | XLOC_023461 |
| TCONS_00046860 | lncRNA | downstream | 353925 | 23755234 ~ 23757297 (-) | True | XLOC_023454 |
| TCONS_00046859 | lncRNA | downstream | 358647 | 23748335 ~ 23752575 (-) | False | XLOC_023454 |
| TCONS_00046389 | lncRNA | downstream | 468317 | 23599781 ~ 23642905 (-) | True | XLOC_023451 |
| TCONS_00046418 | lncRNA | upstream | 52086 | 24166970 ~ 24168462 (-) | True | XLOC_023463 |
| TCONS_00046423 | lncRNA | upstream | 301440 | 24416324 ~ 24451847 (-) | False | XLOC_023466 |
| TCONS_00047194 | lncRNA | upstream | 301440 | 24416324 ~ 24456346 (-) | False | XLOC_023466 |
| TCONS_00046424 | lncRNA | upstream | 301440 | 24416324 ~ 24503022 (-) | False | XLOC_023466 |
| TCONS_00046861 | lncRNA | upstream | 304411 | 24419295 ~ 24451803 (-) | False | XLOC_023466 |
| TCONS_00046404 | mRNA | downstream | 50590 | 24036195 ~ 24060632 (-) | False | XLOC_023460 |
| TCONS_00046405 | mRNA | downstream | 50762 | 24052745 ~ 24060460 (-) | True | XLOC_023460 |
| TCONS_00046403 | mRNA | downstream | 72422 | 24035863 ~ 24038800 (-) | False | XLOC_023460 |
| TCONS_00046402 | mRNA | downstream | 112325 | 23988970 ~ 23998897 (-) | True | XLOC_023459 |
| TCONS_00046399 | mRNA | downstream | 136663 | 23971056 ~ 23974559 (-) | False | XLOC_023458 |
| TCONS_00046411 | mRNA | upstream | 3309 | 24118193 ~ 24162930 (-) | False | XLOC_023462 |
| TCONS_00046412 | mRNA | upstream | 5888 | 24120772 ~ 24146875 (-) | False | XLOC_023462 |
| TCONS_00046413 | mRNA | upstream | 5888 | 24120772 ~ 24163201 (-) | False | XLOC_023462 |
| TCONS_00046416 | mRNA | upstream | 49343 | 24164227 ~ 24168533 (-) | False | XLOC_023463 |
| TCONS_00046417 | mRNA | upstream | 50104 | 24164988 ~ 24168475 (-) | False | XLOC_023463 |
| TCONS_00046400 | other | downstream | 133937 | 23971056 ~ 23977285 (-) | False | XLOC_023458 |
| TCONS_00046386 | other | downstream | 837863 | 23273242 ~ 23273359 (-) | True | XLOC_023450 |
| TCONS_00046372 | other | downstream | 1739122 | 22371986 ~ 22372100 (-) | True | XLOC_023446 |
| TCONS_00046371 | other | downstream | 1802164 | 22308944 ~ 22309058 (-) | True | XLOC_023445 |
| TCONS_00046365 | other | downstream | 2013459 | 22071221 ~ 22097763 (-) | True | XLOC_023443 |
| TCONS_00046414 | other | upstream | 21018 | 24135902 ~ 24163110 (-) | False | XLOC_023462 |
| TCONS_00046415 | other | upstream | 21044 | 24135928 ~ 24146875 (-) | True | XLOC_023462 |
| TCONS_00046441 | other | upstream | 893433 | 25008317 ~ 25024023 (-) | False | XLOC_023476 |
| TCONS_00046479 | other | upstream | 2244355 | 26359239 ~ 26362471 (-) | False | XLOC_023496 |
| TCONS_00046480 | other | upstream | 2246862 | 26361746 ~ 26368871 (-) | True | XLOC_023496 |
