RNA id: TCONS_00047201


Basic Information

Item Value
RNA id TCONS_00047201
length 1463
lncRNA type sense_over
GC content 0.48
exon number 8
gene id XLOC_023476
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 25008211 ~ 25030243 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTGTCGCAACCACCTCAGCTCCTGCTCCCAGTCTCGGCCTGGGTGGAGTAGACTTCAGTACTTCCTCTGAAAAGAACACAGACAAGTTGTCCAGCACCAGACCTGAGGACAGTAAAGCCCTTAAAGATGAAAACCTGCCAGCTCCGATCTGTCAGGATGTGGACAATTTTCAGAAATTTGTCAAGGAACAGAAGCAAGTCCAGGAGGAGATTAGCAGAATGTCCTCTAAACCCATTCTCAAAGTTCAAGAGGACATCAAGATGCTCAGACAGCTCTTGTCCATCTGTGCCAGCGGGCTGCAGAGAAATTCCCTCTCCATAGATAAATTAAAGCTGGAAACTTCTCAGgAATTGAAAAATGCTGATATTGCGCTTCGCACCCAGAAGACCCCGCCTGGACTCCAACATGAAAACACAGCACCATCAGACTATTTCCGGGCACTAGTGGAGCAGTTTGAGGTGCAGTTACAGCAGTACCGTCAGCAGATTGAAGAACTGGAGAATCATCTGACCACTCAGGGCAGTGGCTCCCACATCACCCCTCAAGATTTGTCGATGGCTATGCAGAAGCTCTACCAGACGTTTGTTGCGCTTGCTGCTCAGTTGCAGGGAGTTCATGAGAATGTTAAAACTCTAAAGCATCAGTACCTGGGCTACAGACGAGCCTTCCTAGAGGACTCCACTGACATCTTCGAGTCGAAACGTGTTGCTGGCAAGAAATGGCAGAGTTCTCCGCGTGTCACCACAGGCCCCGCCCCCTTCGGCAGCGTTCCCAATGCAGCGGCCGTAGCCATGGCTGccactctcactcagcagcagCAGCCGGCTCCAGGGTTTGGAACTTCGAACACGTCCGGCTTTAATTTCAGCAACCCAGGCATCAACGCTTCCGCCGGATTGACTTTTGGTGTTTCCAACACCCAGACTCCTGGTTTCGGGGCAGGAGGGCCACTGCTACAGCTCAAAAAGCCACCAGCCGGAAACAAGAGGGGCAAGAGATAAAACAGGATGCTGTTATGGGGTAAAGGGAAGCGTCACGAGGTAAAGATGATGTGTGTCtcagatctttatttttatatatatatatctgtctgtaCATATATATTTTCTCTGTTGGATTCCATTAAAAGGATTTCTTTTCAGTTCTCCCTTTTACCCTGGTGACTGTGCTGTTCTTTTGTTTACTGTTGTCCCTCGAAATGACATTCGATGTAATGGAGCATATTTTGTGACGCACAGAAGACCTGCGAAGGGATTTGCTCTCGGGTTTGAAGATACTCATGAAGTCAGTTTACCTGTGTGTTAGCTTGATTTTAAACCACATGCTCTCTGTGATTGTAAATGCGTCATCCCATCCTGTTAAGATGACCTGTGTACTTGGTTTTCTGGTTAATTGTACCAAATAGATGTCAACCTGTATGATGAGAATGTTACGTTTGTACACACCTTAtttgtttctgt

Function

GO:

id name namespace
GO:0006913 nucleocytoplasmic transport biological_process
GO:0005643 nuclear pore cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046437 lncRNA downstream 25360 24976336 ~ 24982957 (-) True XLOC_023474
TCONS_00047200 lncRNA downstream 178916 24800776 ~ 24829401 (-) True XLOC_023471
TCONS_00047199 lncRNA downstream 179650 24800776 ~ 24828667 (-) False XLOC_023471
TCONS_00047197 lncRNA downstream 312560 24598134 ~ 24695757 (-) False XLOC_023468
TCONS_00046453 lncRNA upstream 214144 25240243 ~ 25244638 (-) True XLOC_023479
TCONS_00047202 lncRNA upstream 219100 25245199 ~ 25247622 (-) False XLOC_023480
TCONS_00046461 lncRNA upstream 382505 25408604 ~ 25412087 (-) False XLOC_023483
TCONS_00047203 lncRNA upstream 724537 25750636 ~ 25754146 (-) True XLOC_023487
TCONS_00047204 lncRNA upstream 1005149 26031248 ~ 26032271 (-) True XLOC_023490
TCONS_00046438 mRNA downstream 3706 24989145 ~ 25004611 (-) False XLOC_023475
TCONS_00046439 mRNA downstream 3764 24992425 ~ 25004553 (-) True XLOC_023475
TCONS_00046436 mRNA downstream 25270 24961899 ~ 24983047 (-) False XLOC_023474
TCONS_00046435 mRNA downstream 48631 24944490 ~ 24959686 (-) True XLOC_023473
TCONS_00046434 mRNA downstream 48710 24944352 ~ 24959607 (-) False XLOC_023473
TCONS_00046444 mRNA upstream 66217 25092316 ~ 25096199 (-) False XLOC_023477
TCONS_00046445 mRNA upstream 67200 25093299 ~ 25166720 (-) False XLOC_023477
TCONS_00046446 mRNA upstream 68604 25094703 ~ 25098719 (-) False XLOC_023477
TCONS_00046448 mRNA upstream 73515 25099614 ~ 25166416 (-) False XLOC_023477
TCONS_00046447 mRNA upstream 73515 25099614 ~ 25166416 (-) False XLOC_023477
TCONS_00046414 other downstream 845207 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other downstream 861442 24135928 ~ 24146875 (-) True XLOC_023462
TCONS_00046409 other downstream 889922 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046400 other downstream 1031032 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046386 other downstream 1734958 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046479 other upstream 1333140 26359239 ~ 26362471 (-) False XLOC_023496
TCONS_00046480 other upstream 1335647 26361746 ~ 26368871 (-) True XLOC_023496
TCONS_00046487 other upstream 1449083 26475182 ~ 26479841 (-) False XLOC_023500
TCONS_00046496 other upstream 1482789 26508888 ~ 26534654 (-) False XLOC_023502
TCONS_00046542 other upstream 4001329 29027428 ~ 29028548 (-) False XLOC_023535

Expression Profile

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