RNA id: TCONS_00047220


Basic Information

Item Value
RNA id TCONS_00047220
length 756
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id XLOC_023563
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 31455086 ~ 31458194 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTCCACCAGTCAAATCTGCTCAAACCTCAATGACAATTTTCTGATATTCTCTGAACTGCATGAAGTTACACAGCAGATAAATATGTAAACATACAGTGAAAAAAGCTATacatatattaatgttttgtatTGATTACACAATAAGCACTTGTATTGttttgcgtatgtgtgtgtgtgtgtgtctgtcattgTTCATGACTTTTTTATATTTGATAACTTTATGTAATGTATATCATAAAGCGATGAAATATGAAATGGCATTGTGGGCGTGTTTTCAGGCTTGCTCTGCAGATGATGGACAGCGTAATGAATTGTAGCCTCACTTCACTTCTGAGGTCTGTTTGCAGATGGTATTAGTGGTCTAAATGTGCTAATTGCATCAGGCAGTAACATTGGGAGCAGTGGAGCCGCGGTCAGATGAGAAGGATAAACACAGCAGAGATCTGCTCAGACACTGCCTGACACTCGGGGATGTTCAGCAAACTCAAGAAGATCATTGGGGGTCCGACTGTGGGTCCCACCCCGGCTCCAGCACCTGCTCCGGCCCCTGCACCCGCTCCTGCTCCAGCTCCTGCACCTGCCAAGGTAGATACTATTGGCTTTATCGACACATTTTTGgtgtttttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacatacataca

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046578 lncRNA downstream 356237 31098534 ~ 31100851 (-) False XLOC_023556
TCONS_00046574 lncRNA downstream 375655 31055418 ~ 31081433 (-) True XLOC_023554
TCONS_00046875 lncRNA downstream 380559 31040020 ~ 31076529 (-) False XLOC_023554
TCONS_00046874 lncRNA downstream 484225 30927688 ~ 30972863 (-) True XLOC_023553
TCONS_00046873 lncRNA downstream 545223 30903443 ~ 30911865 (-) True XLOC_023552
TCONS_00047221 lncRNA upstream 251658 31709501 ~ 31717481 (-) True XLOC_023565
TCONS_00047222 lncRNA upstream 297404 31755247 ~ 31756351 (-) True XLOC_023566
TCONS_00047223 lncRNA upstream 904590 32362433 ~ 32363362 (-) True XLOC_023574
TCONS_00046877 lncRNA upstream 949051 32406894 ~ 32408404 (-) False XLOC_023575
TCONS_00047224 lncRNA upstream 1249598 32707441 ~ 33044880 (-) False XLOC_023581
TCONS_00046589 mRNA downstream 4165 31430890 ~ 31452923 (-) False XLOC_023562
TCONS_00046591 mRNA downstream 4213 31431422 ~ 31452875 (-) True XLOC_023562
TCONS_00046590 mRNA downstream 17247 31431422 ~ 31439841 (-) False XLOC_023562
TCONS_00046588 mRNA downstream 31289 31406374 ~ 31425799 (-) True XLOC_023561
TCONS_00046587 mRNA downstream 34514 31402894 ~ 31422574 (-) False XLOC_023561
TCONS_00046594 mRNA upstream 374615 31832458 ~ 31846366 (-) False XLOC_023568
TCONS_00046595 mRNA upstream 376700 31834543 ~ 31843173 (-) True XLOC_023568
TCONS_00046596 mRNA upstream 438881 31896724 ~ 31904924 (-) False XLOC_023569
TCONS_00046597 mRNA upstream 439255 31897098 ~ 31905000 (-) False XLOC_023569
TCONS_00046598 mRNA upstream 439300 31897143 ~ 31904938 (-) True XLOC_023569
TCONS_00046586 other downstream 125175 31323355 ~ 31331913 (-) True XLOC_023560
TCONS_00046583 other downstream 233905 31218823 ~ 31223183 (-) True XLOC_023558
TCONS_00046577 other downstream 366140 31084689 ~ 31090948 (-) True XLOC_023555
TCONS_00046564 other downstream 1459898 29964976 ~ 29997190 (-) True XLOC_023547
TCONS_00046553 other downstream 1983113 29473856 ~ 29473975 (-) True XLOC_023538
TCONS_00046592 other upstream 182469 31640312 ~ 31640427 (-) True XLOC_023564
TCONS_00046593 other upstream 328620 31786463 ~ 31786577 (-) True XLOC_023567
TCONS_00046605 other upstream 715295 32173138 ~ 32196412 (-) True XLOC_023573
TCONS_00046633 other upstream 2654913 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046660 other upstream 4837468 36295311 ~ 36300996 (-) True XLOC_023621