RNA id: TU1678084



Basic Information


Item Value
RNA id TU1678084
length 620
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1467113
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57339441 ~ 57340388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggatttatggtgcttgaAAGACATCTgtgaactctgaaaaaaaacaggtggaatcatgatgacgtcagtgatcttcaggtgggaactctagaaagaggcccgagttcctgacttgcaattccgagttgaatgacccttcaaaatgtatttttccatccggtgctctttaaaaaaaaaaaatgtttttttgagttcccagttgtcttgaactcactgaagtctgagatttcccagttcaatgtttccagttgttttgagcgtggcagcatggccaatgttgaatgtttatccttttaagcttgtaAAAGAGACTCTTAAACCCAGACCACatacccactccactgaatagcaggctagtgattgccaAAATGAAtaccatatgctgcatttgctttAGAACTATTgcttacctttttgttggtgacactttgatatctgtttaaagggcaaatccacagatgaaacaataacaaatcgccctgcctctgttttggtaaaaagctgagggatgggcctggagaaatgtgaccactctcagattaatagacagagctagggatgcaaggactgaccatccataatATAAAAatggttttaaccatgttatgaggcaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1678018 lncRNA upstream 127182 57194474 ~ 57212587 (+) True G1467054
TU1678004 lncRNA upstream 165804 57173549 ~ 57173965 (+) True G1467041
TU1677992 lncRNA upstream 192628 57146488 ~ 57147141 (+) False G1467030
TU1677993 lncRNA upstream 192628 57146513 ~ 57147141 (+) True G1467030
TU1677955 lncRNA upstream 223025 57113017 ~ 57116744 (+) True G1467001
TU1678092 lncRNA downstream 8076 57348464 ~ 57349023 (+) True G1467121
TU1678094 lncRNA downstream 9576 57349964 ~ 57351358 (+) True G1467123
TU1678093 lncRNA downstream 11132 57351520 ~ 57353653 (+) True G1467122
TU1678095 lncRNA downstream 19001 57359389 ~ 57359636 (+) True G1467124
TU1678097 lncRNA downstream 20734 57361122 ~ 57361382 (+) True G1467126
XM_036950257.1 mRNA upstream 10042 57305804 ~ 57329727 (+) False tegt
LOC110493228 mRNA downstream 128365 57468753 ~ 57474567 (+) False LOC110493228
XM_021569041.2 mRNA downstream 157917 57498305 ~ 57545482 (+) False LOC110494206
XM_021569042.2 mRNA downstream 157920 57498308 ~ 57545482 (+) False LOC110494206
XM_021569032.2 mRNA downstream 315561 57655949 ~ 57665568 (+) False LOC110494197
XM_021569033.2 mRNA downstream 315561 57655949 ~ 57665568 (+) True LOC110494197
TU1677994 other upstream 189426 57149303 ~ 57150343 (+) True G1467031
TU1677991 other upstream 192028 57146513 ~ 57147741 (+) False G1467030
TU1677978 other upstream 220883 57117702 ~ 57118886 (+) True G1467020
TU1677617 other upstream 757048 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 1118823 56219242 ~ 56220946 (+) True G1466224
TU1678132 other downstream 138409 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 157994 57498382 ~ 57548178 (+) False LOC110494206
TU1678198 other downstream 249477 57589865 ~ 57614300 (+) True G1467219
TU1680364 other downstream 1166909 58507297 ~ 58507885 (+) True G1469076
TU1682011 other downstream 2761504 60101892 ~ 60104007 (+) False G1470607

Expression Profile