RNA id: TU1678094


Basic Information

Item Value
RNA id TU1678094
length 1395
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1467123
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57349964 ~ 57351358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTGGGTTCTTGCATTTGTTTAGAGACATAAAATGAACATAATCATCATCATTGTGTTTTTACTGCCTTGATAAAATACATTACGGTTTATGGCTTCATTTGAGATCTGGTGGAAATTCTATGTACATAACACCTTGAAATACTATTTACAATTACATGAGTAATAAAATGAGAATACCCCAGACAACAGAACAAAAGACAGGCCTCTGATGAAAATAACAACCTTTCACTCAATAGAATAAAATAAGAGTATAGTACAAAAATAATGGGTATCAGAATAAAAACAGCAATAACGTCAATGACTCAACAGAAACAAAAATTTCATTTCAGTATGATTTgacctaaaaaaataaataagtacatAAATACAACAGATCGAGATAAATCGCGAGTCCATAAAGCAAACGTACTAAGTAAAGATTCCACGACATCGCCACGCCACTCCATACTAGTCAGCATTGGCATGGTTATTGTACATGGTGTTGCTAAGACTCCTGACCGGGGAATGACCCATGTTTTGGGGGGTTTGTCCGCAACGTAGAACACAGGATGTTTTATGAGATGATTGTAAAGCGAATGGCCTTCATGTCAAACCCTTGTTTTCATTTTGACATAAACCAGACGGGCTTGAAAGGGTGGAACGGTAGCAGATATTCTGGAAGACTACCTCTTCAACTGAAATCTATCTGTTCTCACAGACGACTGtgtatacagtaacagtcagATCTCCATttagtagttttttttttttttaactcagaagggggagagaggggggctaAAGGAAAGGCAAGGTTCAAAGTGGGATTATGAATAATTTTCAACTAGAAAAAGGTCAAATTCATGTCCGTTTTGAAAGATCACTTGCTTCTGAAAGCTCAGAGTTTGGAAGCACAAGGATGTCTTATCCCTGAAGGAGTTTCTGGGGAGTTATGAAGTTGAAGTGGATGGacctatactgaacaaatatataaaatgcaacaagcaacaatttaaaagattttactgagttacagttcatataaggaaatcagtaaattgaaaataattcattaggccctaatctatggatttcacattactgtataaacagatatgcatctgttggtcacctttaaaaaaaggtagggacatggatcagaaaatcagtctgtatctggtgtgaccaccatttgcctcatgtagcatgacacatctccttcacagagagttggatcaggctgttgattgtagcctgtggaatgttgtcccactcatcttcaatgggatggcagatagcctagtggttagagcattggactagtaaccgaaaggttgcaagatcgaatcccagagctgacaaggtaaaaatatgctattctgttagttcctaagctgtcattgaaaataagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1678092 lncRNA upstream 941 57348464 ~ 57349023 (+) True G1467121
TU1678082 lncRNA upstream 9576 57339441 ~ 57340388 (+) False G1467113
TU1678084 lncRNA upstream 9576 57339769 ~ 57340388 (+) True G1467113
TU1678018 lncRNA upstream 137377 57194474 ~ 57212587 (+) True G1467054
TU1678004 lncRNA upstream 175999 57173549 ~ 57173965 (+) True G1467041
TU1678093 lncRNA downstream 162 57351520 ~ 57353653 (+) True G1467122
TU1678095 lncRNA downstream 8031 57359389 ~ 57359636 (+) True G1467124
TU1678097 lncRNA downstream 9764 57361122 ~ 57361382 (+) True G1467126
TU1678098 lncRNA downstream 11405 57362763 ~ 57363049 (+) True G1467127
TU1678105 lncRNA downstream 24566 57375924 ~ 57376166 (+) True G1467134
XM_036950257.1 mRNA upstream 20237 57305804 ~ 57329727 (+) False tegt
LOC110493228 mRNA downstream 117395 57468753 ~ 57474567 (+) False LOC110493228
XM_021569041.2 mRNA downstream 146947 57498305 ~ 57545482 (+) False LOC110494206
XM_021569042.2 mRNA downstream 146950 57498308 ~ 57545482 (+) False LOC110494206
XM_021569032.2 mRNA downstream 304591 57655949 ~ 57665568 (+) False LOC110494197
XM_021569033.2 mRNA downstream 304591 57655949 ~ 57665568 (+) True LOC110494197
TU1677994 other upstream 199621 57149303 ~ 57150343 (+) True G1467031
TU1677991 other upstream 202223 57146513 ~ 57147741 (+) False G1467030
TU1677978 other upstream 231078 57117702 ~ 57118886 (+) True G1467020
TU1677617 other upstream 767243 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 1129018 56219242 ~ 56220946 (+) True G1466224
TU1678132 other downstream 127439 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 147024 57498382 ~ 57548178 (+) False LOC110494206
TU1678198 other downstream 238507 57589865 ~ 57614300 (+) True G1467219
TU1680364 other downstream 1155939 58507297 ~ 58507885 (+) True G1469076
TU1682011 other downstream 2750534 60101892 ~ 60104007 (+) False G1470607

Expression Profile