RNA id: TCONS_00050671


Basic Information

Item Value
RNA id TCONS_00050671
length 1415
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_025795
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 56574623 ~ 56594285 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCAAACTTTCTTACTCGACTTCATTCCTGTGTGCGGGAATGAGAGGAGGAAGAAAAGTTATTTTAGAGAAGCGCCTTACCGTGCAGCTGTGACTGGTGTTGTTTGAAGCGGCGTCGCTCGTTAGAGGGGTTTTTTCATCAGTTCCGCGCGGAGGGAGAGCAAAAATCGAGTAAAAGTCATGCAGGCCATCAAGTGTGTGGTCGTCGGTGACGGGGCTGTGGGTAAAACATGTCTGCTGATCAGCTACACAACCAATGCTTTTCCCGGAGAATACATCCCCACAGTATTTGATAATTATTCTGCGAATGTGATGGTGGATGGGAAACCGGTGAATCTGGGCCTGTGGGATACAGCAGGACAGGAGGATTACGACAGACTTCGCCCTCTCTCGTACCCTCAGACGGACGTGTTCCTCATCTGCTTCTCTCTCGTGAGTCCTGCCTCTTTCGAGAACGTCCGTGCAAAGTGGTATCCAGAAGTGAGACATCACTGTCAAACCACTCCCATCATCCTGGTGGGAACCAAGCTTGATCTGAGAGACGACAAGGACACCATTGAGAAGCTGAAGGAGAAGAAGCTCACTCCCATCACCTACCCTCAGGGCCTGGCCATGGCCAAAGAGATCGGGGCAGTGAAGTATCTGGAATGCTCGGCACTCACACAGCGTGGCCTGAAGACGGTGTTTGATGAGGCCATCCGGGCCGTCCTGTGCCCTCCACCCGTcaagaagaggaagaggaaatGCTCCCTGCTGTAGTCTTGAGGAAACGCCGCTGTAATCCAAACTGTATTCCTAAGAGGAGAAGTGAGAAACGACACTGCGGTTTCCTTTTTCACTTCCCTCACTGTAATTATACCAGTACAACTTTATACCTTCACAAACAAATGTTATCAATATTATCGATAGAAGTAGTAAGAATTATCCCCAACGACCGACACTACAGGACGACCTGCGGCCTTTGACTATTGGATGTTAACGTTCAGTTCTTGAAGTTGGTTCCTTCCATTGAGAACCCACAATGTTTGTTTATAGTCTTTGTTTGAAAGGAATGAAGATCTTGCCAAACAGCACTACATTAGGGTGGGGCAGCATCACGCGTACTGATTTGTAACCCCTAAAGGGCAGCGATCATTTGGCGAACTAGAGCTAACGGTTGAAGCCGGTGAGTTTTCAGTGAAGGCTTCTATCTCATGCCTGTTTCTGAAACATGCGGTTCTGTTAATGGAAGGATGAAGAGTCTGAACTGATGTTTATCGGTCTTCATTATGTCTCTGCACACTATTTGCCATTTGTTTAGGGAGTTTATTCTGTAATGAACATGAACGTCCTGGCCATGTTTCACTCTTGAATTGTAAAAAACGGATTTTGCTTTTTAGAAACAGTTTCATGACTATTAAATctcttttacttta

Function

GO:

id name namespace
GO:1902622 regulation of neutrophil migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0016601 Rac protein signal transduction biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0043197 dendritic spine cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-45 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and dendritic spine. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 48; colon adenocarcinoma; and pancreatic adenocarcinoma. Orthologous to human RAC1 (Rac family small GTPase 1).

Ensembl:

ensembl_id ENSDART00000130877

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052385 lncRNA upstream 213973 56358682 ~ 56360650 (+) True XLOC_025793
TCONS_00050665 lncRNA upstream 466714 56099256 ~ 56107909 (+) True XLOC_025791
TCONS_00052808 lncRNA upstream 920359 55646873 ~ 55654264 (+) True XLOC_025790
TCONS_00050663 lncRNA upstream 1086382 55482141 ~ 55488241 (+) False XLOC_025789
TCONS_00050673 lncRNA downstream 24910 56619195 ~ 56622872 (+) True XLOC_025796
TCONS_00052809 lncRNA downstream 227414 56821699 ~ 56822203 (+) True XLOC_025799
TCONS_00052810 lncRNA downstream 355670 56949955 ~ 56957558 (+) True XLOC_025802
TCONS_00052811 lncRNA downstream 831875 57426160 ~ 57480996 (+) True XLOC_025806
TCONS_00052812 lncRNA downstream 839976 57434261 ~ 57436304 (+) False XLOC_025807
TCONS_00050669 mRNA upstream 180605 56366395 ~ 56394018 (+) False XLOC_025794
TCONS_00050670 mRNA upstream 181024 56377326 ~ 56393599 (+) True XLOC_025794
TCONS_00050667 mRNA upstream 232504 56163276 ~ 56342119 (+) False XLOC_025792
TCONS_00050666 mRNA upstream 232504 56163276 ~ 56342119 (+) False XLOC_025792
TCONS_00050668 mRNA upstream 290501 56276346 ~ 56284122 (+) True XLOC_025792
TCONS_00050674 mRNA downstream 51425 56645710 ~ 56685946 (+) True XLOC_025797
TCONS_00050675 mRNA downstream 104902 56699187 ~ 56813923 (+) True XLOC_025798
TCONS_00050676 mRNA downstream 281995 56876280 ~ 56877918 (+) True XLOC_025800
TCONS_00050677 mRNA downstream 310818 56905103 ~ 56915709 (+) False XLOC_025801
TCONS_00050678 mRNA downstream 310818 56905103 ~ 56918442 (+) True XLOC_025801
TCONS_00050664 other upstream 1090976 55483513 ~ 55483647 (+) True XLOC_025789
TCONS_00050662 other upstream 1275465 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050635 other upstream 2506984 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050620 other upstream 3745617 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050613 other upstream 3954448 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050682 other downstream 1042089 57636374 ~ 57639448 (+) False XLOC_025808
TCONS_00050688 other downstream 1231654 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050692 other downstream 1403705 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050699 other downstream 1574238 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050717 other downstream 2108035 58702320 ~ 58710755 (+) True XLOC_025845

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_03291919_03299963.mRNA True 1222 mRNA 0.45 5 CI01000112 3291241 ~ 3299963 (-)
eurasian perch (Perca fluviatilis) TU87520 True 905 lncRNA 0.46 1 NC_053117.1 28569141 ~ 28570045 (-)
bowfin (Amia calva) AMCG00018410 True 579 mRNA 0.53 6 CM030135.1 10029502 ~ 10041516 (-)
mexican tetra (Astyanax mexicanus) TU87520 True 3872 lncRNA 0.38 8 NC_035903.1 17690229 ~ 17719911 (-)