RNA id: XM_021578194.2


Basic Information

Item Value
RNA id XM_021578194.2
length 5268
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110500691
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 51457228 ~ 51485888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCCGCCCCATTTTACAGGGTGGTGGCAAGTTGCATTGGAGACTTCAAGGCGGAGGTGGCTAAGAGCGATCTGTCACGACAAGTTTACAAATTTACCTGTTTTCAAGGGACAAACACCCTAGGGGAAAGGCTATTCCAATAACCAACGTGGCAGAAGTAGAATTCGGAAATGGATGGAATGTATGGATGGGGACAGCCCCCTTTGAACCAAGggaaTTCTTTCATAGAGATCATTGAGCAGCCCAAGCCGAGAGGCATGAGGTTCAGGTACAAGTGTGAGGGGCGCTCGGCGGGCAGCATCCCGGGAGAGAAGAGCAACGATACCACCAAGACACACCCCGCCATCAAGGTGCACAACTACAATGGTCCCCTGCGTGTCCGTGTCTCcttggtgaccaagaacccgccTCACAAGCCCCACCCGCACGAGCTGGTGGGGAAAGACTGCAAACATGGCTACTATGAGGCAGACTTGCAGGAGAGACGAGTACACAGgtcagactgtgtTTTTCAGAACCTGGGCATTCAGTGTGTGAAGAAAAAGGATGTGAACGAAGCAGTTTCCTGTAGACTGCAGACCCAAAACAACCCTTTCAACATTCCCGAGGCGAAGGTGTGGGAGGAGGAGTTTGACCTGAATGCAGTGAGGCTTTGTTTCCAGGCCTCGATCACTCTACCTACCGGTGAACTTCACCCTCTGGAGCCCGTGGTGTCTCAGCCCATCTACGACAATAgagCACCCAACACAGCAGAATTGAAGATCTGTCGAGTGAACAGAAACTCTGGGAGCTGCAGAGGAGGGGACGAGATATTCTTACTCTGTGACAAAGTGCAAAAAGAGGACATCGAGGTACGGTTCTTCCAGGACTCGTGGGAGGGGAAGGGCACCTTCTCCCAGGCGGACGTCCACAGGCAGGTGGCCATCGTGTTCCGTACCCCGCCCTTCTACGACACCAACTTGACCGAGCCAATCAAAGTGAAGATGCAGCTTCGCAGGCCCTCGGACCGCGAGGTCAGCGAGCCAATGGACTTCCAATTCCTGCCCTCCGACCCAGATGAATATAGACTGATAGAGAAGCGAAAACGGACAGAGGGAATGTTCCAGAATCTGAAGCTGGGGTCCATATCAGGGGCCATGCCAGCAGAGAGGCCTTTCAACACTGCCAGAAGAACAGTCGCCACCAAGCCAGCAGCTAGCCAGCCTGTGAACCTAGTGGCGCCCCCTCGTGCCGCCTCTGTGAAGCCCCAGCCCTACTATGATAGCCCCCAGCCTGGCCAGCTGTTCCGAACCCAGCCCAAAGCagagccctcctcctccactccagcAGAGACCTGGAAGTTCCTCAACAGCCTGACCTTGGACTCCCAACACAAAGCCACCCCCGTGGCCCAATTCACCAACCCCCAGGCATCTGCAGCCACCTCACAGGCCTTCCCCACCGTCAACCTGTCGGACCTTCACGGCTTCACCTTCTCCACCTTCGCTAGTCCCCAGGAGCCAGTTGGCGCAGCCGCTACCCCAGAGCCCACCTCTACCTACGGGGTCCAGGATTCCCAGTTCAGGGTGGATGGCCCCATGGTGGATGAGGAGCTACCCGAGTTCCCCAGCTTCTCTGAGGTCCACCAGTCAGGGACACTAGATAACATAAACATCGACGACTTCCAGGCTATGCTGGTCCAGAGTGGTCTGGCTGGAGAGGGGCCAGGGAACAGTAGGGTGTCGGTCGCTCAGGCACCCTGCCACTTACCTGCCACCAACCCTGTGGTCAACAACAGCTGTGGCGGCAGCACCTGGATGAACTACCCCAACAGCATCgtgaacctgctccagagtgagGGCATGATCGACAGTTCTCCTGGCAACTCCAGCCAGCCGGCCGTCCTCGACGACCTGGACGTCTTCAGCTCCATGGACGAAGACCGTCTCATTTCCATCCTGAACAGTGGCAACCAGGCCGGTTTCGTGTCCGGACATCAGACTTAGAGACCGCTCTGATTTTACAGATATTTTTACTGCAATACTACATTTCTGTAGACCCAGCTCCCTTCCAACCAAACTTCCCTTGTACTTGTTATTCTAATGGACTACAAAGAAAATACATTTGGCTGGCTGATCGAGAATCAGATGGTGCTGTTTGCGCTCTTCTCTATGTGGATTGTGGACATGTTAATTGGGACAGCTGCAGAACCCTACCTGTACTCGATGAACAGAGTGAATATGAGAGAGGGCTACAGGGAACCCCTGGTAACTGCCAGTTTGTGGGCAATCACGAGACCCAAGGATTTGTCACTTTTTGTCAACCCATAAAGATACACCTCCAATGGGTTGTGTATAAACCCAGGCTTGTATCTAGTCTCCAAAGGCAGTGGTATTCACTCCTGGTCCCTAAGAACTTCACGGTTTGAAATGTGTATTCGTGAATCATTGTCAATGTATGGACTGGATAGTCCAGGTCCCGGTTTCCCGATAGCAATGGAACTTAGGCTGACGATGTTTTTAACACTGCATCTTTCCTACAACGCCTGAAGATGTAACATACAGAGTACACacaacattaaggacacctgctctttccattacatagcccagggatattcaactcttacccagaggtccagagcctgctggatttcctgttctacctgataataattgcacacacctggtgtcccaggacTAAATCtctccctggttagaggggaacaatgaaaaaaatgcAGTGgcactggctttgaggtccagagttgaccaggtgaatgctatgatcccttattgaggtcacttgttaaatctacttcaatcagtgtatgaaagggaggggacaggttaaagaaggatttataagccttgagacatggattgtgtgtcaATCAGaaggtgaatgagcaagacaagatttcagtgcctttgaacggggtatggtaggtgccagacgcaccggtttgtgtcaagaactgcaacgcggCTAGGTTTTTCACAAGTTTCCcatttgtatcaagaatggtccaccacccaaataaAATCCAGCCAACTTGTGCTGTCAAGTTGGAGACGTGCCAGGatccctgtagaacgctttcgacaccttgtagtcgtGGTTGCTCTCCAAATAAGAATTAAAATGATTGCTCTGTCATCTATTATATTGTGCTTGTTTGTGTGCTATATATTTTGTTGGACTCGAAGAATGTCAGTAGATTCTGATTTTTACCAGAAATCGGGTCATAATATTAACCTTGGCTTTCACAGCTTGTCATTTGGAACTTTAACATTTTGGATGTGAAAGGGAAAATATTTCTCAAAAAAAGGGAATCATTTTTGCAAGCACAAAATAAGTTCCCAGTTTAGTTACCTAATCTAACAACCAATAAATCATTAATGGTTGGTcctcaaactcattccacggagggccaagTGGCTGCAGGCTTTCGCTCCTCCCATGTACTTccttgatgaattaaggtcattaattagtaaggaactcccctcacctgattgtcggtcttaattgaaagggggaaaaaaacctGCAGGCCCTCCGTGAAATGACTGACATCCGATATATTTGTAGATGAGGCAGATGTCTATGCATTACAACCATTCAAAATTTAAATTGGAAGTGTACTACTAGCCTATAGTGTAGGTAGTGTAATATCACTGTACTATAAAGCAAGAGAAGAATACATTGAAACGACAATGTGCTTAGGCTTTAgatcacgtgtcaaactcattccacggagggccgagtgtctgcgggttttcgctcctcccctGTACTTGATGAATTAAGGTTACTGATTAGTAAGGCACTgcactcacctggttgtctagggcttCATTTAAAGGAAAAGCCAGCAGCCCTCAATGGAATGAGTGATGCCCCTGCCTTAGGTGATATGCGCGATATAGTACTCACCTTGGTGACATATCTAAAATGTTATGTAGTTTTACCATGTTAACATTAACTTGTCACTGTAATTTTCAATACATCGTTGGAAAAGGAAGGATATTGTTTATAGATGTCAGAAATGTAGCAGATTCACTGATATGCTTAGTAAAAAAGATTTGTTAGTCGAGTCGGTATCTCATATCATTTCCGCCCGTCAATTATGCTCATTCAGTGTAGTTTGCTTTTAGGCCAGTGTGATACGATTACATTTTGCGGTATGGTATATGAACTTCGGCTGCAGTTCATTTTacataaaataaaacatgtttaattAAACCATAACTCTGTACTTAAACCAATGCTGCCTCACTGAAAACAGACACTTGTATAATAATTTTGTAGAAGTATATATGCAGACAGAAAATGAGATTAATTGAAACATTTGGGTTTGCTAAGTGATTGTACGTGTTGCCTACTACACTTCCCACAATGTCCCTCAATACAGTATAAATAATCCTCTTAAGGAGCTGCCCCTTAAATTTTACCTGAAATGACTgcctaactgcctgtagctcaggacctgaagcaaggatttgcatattcttgataccatttgaaaggaaacactttgaagtatGTGGAAATGTGAACTAGGAGAATAACACAGCTCTGGTAAAAGTTGGTACAAAATAACGCATTGTTTTTAAAATTTGTATTACggtttgaaatgcaagagaaaggtcatgtattattccagcccaggtacaATTTAGATTTACCACAAGattgcagcagtgtatgtgcaaggtTGAAgattgatccaatgaaccattgcatttctgttaaattttgtatcaagactccccaaatgtgcctaattggtttattattaacattaagttcataactgtgcactcaaacaatagcatggtattctttcactaatagctactgtaaattggacagtgcggttaaattcttgttaatctaagctttctgccaatatcagatgtctatgtcctgggaaacttTCATTACTTACAATCTCATTAgcatacgttagctcaaccgttccATGGGGaacccaccgatcctgtagaggataactgacaatacaacagaatgtttaaaatacatttatttggcAATTGTTGTAATTGATAACATTGAGTACAAAACATAGAAGCCAAACAATGAAAGTGGTAAGACATTTTTATTACAGATACCTTGACATCTTTGTAAATGTTAAATGTACAGAATcacaacaaaacatgcatgtattcaGTCACTGCATGACCAGTGGCAAGCTCTAGTTTCAGAGTTGTGGATGGCAGCCGCACTACCAAATAAGTAGATTAAAGACTTGATTTACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2003335 lncRNA upstream 31687 51418969 ~ 51425541 (+) True G1749650
TU2003339 lncRNA upstream 40875 51414780 ~ 51416353 (+) True G1749654
TU2003333 lncRNA upstream 43010 51413371 ~ 51414218 (+) True G1749649
TU2003362 lncRNA upstream 53687 51389695 ~ 51403541 (+) True G1749677
TU2003359 lncRNA upstream 72082 51384345 ~ 51385146 (+) True G1749674
TU2003404 lncRNA downstream 66221 51552109 ~ 51554819 (+) True LOC110500695
TU2003340 lncRNA downstream 84523 51570411 ~ 51573264 (+) True G1749655
TU2003558 lncRNA downstream 290513 51776401 ~ 51777211 (+) True G1749835
TU2003559 lncRNA downstream 291823 51777711 ~ 51780760 (+) True G1749836
TU2003590 lncRNA downstream 334765 51820653 ~ 51820956 (+) True G1749858
XM_036958136.1 mRNA upstream 43981 51370721 ~ 51413247 (+) True LOC110500885
XM_036958135.1 mRNA upstream 95694 51354091 ~ 51361534 (+) False LOC110500687
XM_021578189.2 mRNA upstream 95695 51351313 ~ 51361533 (+) False LOC110500687
XM_021578199.2 mRNA downstream 15710 51501598 ~ 51507145 (+) False LOC110500694
XM_036958139.1 mRNA downstream 15710 51501598 ~ 51507145 (+) True LOC110500694
XM_021578200.2 mRNA downstream 23395 51509283 ~ 51554830 (+) False LOC110500695
XR_005038634.1 mRNA downstream 23395 51509283 ~ 51554830 (+) False LOC110500695
XM_021578207.2 mRNA downstream 1476244 52962132 ~ 52963960 (+) True LOC110500700
TU2003334 other upstream 6753 51418969 ~ 51450475 (+) False G1749650
TU2003336 other upstream 93848 51362686 ~ 51363380 (+) True G1749651
TU2003175 other upstream 315220 51134089 ~ 51142008 (+) True gbrap
TU2003188 other upstream 323890 51116445 ~ 51133338 (+) True LOC110500674
TU2002232 other upstream 853951 50598910 ~ 50603277 (+) False LOC110500883
TU2003752 other downstream 585712 52071600 ~ 52079002 (+) True G1750012
TU2003773 other downstream 608821 52094709 ~ 52095105 (+) True G1750030
TU2003797 other downstream 705312 52191200 ~ 52197007 (+) True G1750050
TU2005665 other downstream 1476561 52962449 ~ 52972383 (+) False G1751699
TU2005666 other downstream 1476561 52962449 ~ 52972383 (+) False G1751699

Expression Profile