RNA id: XM_036958223.1


Basic Information

Item Value
RNA id XM_036958223.1
length 2924
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC110500735
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 54206483 ~ 54342581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTTACTTGACTATCCAGTGTACTGCTACTGCAGGCTCTTTAATTATTGACAAGACTTCGAGGGGAAAAGTACTAGCTAGTGCTCTCATAACATTCATTTTGCAACGTGTTTTCCTCTCACTTAAAAAATAGGCACAACGCGTCAGTTTTATCAAGGACATTACACATTTTATTCATTTACGCCAGGTTttatgttgtttttattttttttcaaagcTTCGTTTTTGGCGTGTTCTCATCTGGAAGGAACCTGTGCGTACGTACGAGAAGGTGTATCCGTTATGCGCGCCTCTGTGCAGTGGTCTGGTGCGGTAAACGCCCTGTGAGAGATTTTTGAGAGGTGGTGTCATCTTTTAGGGCCAGAAGATTCTATTTATATTAGAAAGCTGCAATCCCTTAACTATAACTCAGCCTGAGCTGCTTGTAAGCTACCCGAGAGAGGCTTTCGGGAATCATATGACCTGCTGCAGCTCATTCCAAAGATACCGGAAAGGGCGCTCGCTCCCGCAGCTTTTGCGCTCTTTCAAACCACAGTCTTCGGAAAGGGGTACATCTGGAGGATGTACAACACCGCAGGACAACAGAAAGACCTTGAATATTAGAAGAAGAAATACTGCTCTTTGTTTGTAACGGATATATATATAACAGTTGAGAAGGGACACCGATAGAGCAAAAAATGCCGGAGGAAAAAGtattTCACCAGCAGGCTGTCCACAgccctctggagcaggggaaGCAGGGGAAGCAGGGGAAGCAGGGCAGCGGCGGCAGCAGCTCTGTCCCCTGTCAGAACTGTGGCAAGGCCTGCAAGGGAGAGGTGCTGCGCGTGCAGAACAAACACTTCCACATCAAGTGCTTCGTCTGCAAAGTGTGTGGCGTTGACCTGGCCCAGGGGGGGTTCTTTGTGCGTCAGGGGGAGTACATCTGCACCCTGGACTACCAGCGGATGTACGGCACGCGCTGCTTCAGCTGTGAGGAGTTCATCGAGGGAGAGGTGGTGTCAGCGCTGGGAAAGACCTACCACCCACGCTGCTTCGTCTGCGTCACCTGCAAACAGCCGTTCCCTGCCGGTGACCGTGTGACATTTAACGGTAAAGAGTGTGTCTGCCAAAACTGTACAGAGCCCCAGTCTGCCAACAGCCCTGCTCCCATACAGGCTGTCCACAacTGCTGTGGCTGTGGGAAGGAGTTTAAGAATGAGCAGTCTCTGGTAGCGCTGGATAAACACTGGCACCTGGGCTGCTTCAAGTGTAAGGTGTGCAACAAGGTGCTCAACGCCGAGTACATCAGCAAgGATGGGATCCCCTACTGCGAGGTGGACTACCATGCCATGTACGGCATCCAGTGTGACAGCTGCAAGAAGTACATCACTGGGAAAGTACTGGAGgctggggagaAACACTACCACCCGTCATGTGCCCGCTGTGCCAGGTGTGAGCAGAtgtttggagagggagaggagatgtaCCTGCAAGGTAACTCCATCTGGCATCctccttgcagacaggcagccagacaggAGGAGAAGAGTAAGAAGCAGGTCCGGATACAGGTCAATGACGTCCCTGAGCAGCAGGTGAGCAGGACTTCCTCTGAGAGCATCACCTCTGTCCCAGCCTCCAGTGCGTCTGGCTCTCCGAACAGGGTCATCTATGCCAAACTAGGAGATGAGATGCTGGACTACAAAGACCTTGCTGCTCTGCCAAAGATCAAGGCGATCTACAACATCGACCGGCCAGACATGCTCTCCTACAGTCCCTACGTCAGCTACCCCTCAGAGGAACGGCACTACGGAGAGGGTGACGGAGAGAAgtctcctcgtcagaggaggccCTCCAGCCCCAGCTCCAACAGCTCCCTGGGGAAGTATGGAGGGTACACCCCTTCTCGCTCCCCCCAGAACTACAGCAGGCCGGGGGATCTTTATATGGCCAGTAAAGCAATGGGTAATAGATATGGCCAGGCCCTTGACTCCAgctccctcccccacccctcaGCCTACACAGGGGGGCCTAAGTACCTCTCCTCCTTGGCTAGGGACTCCTCCTGCCTCCCCATGGACTACTCAAGGGGTCTACCCCCCAAGTTCCCTGGGGGGCTGCAGGTGCCTGGGCCGTTGACACAGCCTGGTAATATGTCTCCTGGAGGCAGAAACTCTCCTCTGCcccttaaccctaccaccctGGCCGTGCTCCAGCAGCACAACTATGTGCCCTACTTCAGAGGTAGTGAAAGTGGTCGGAGTACCCCCAGTTTGTCCACGTATTCCGATGGCAAATCTCCCTCCTTCACCTATGTGGCAACTCCCAGGCATTTCCACGTACCAGCCTCTAGAACTTCCTGGCAAGAAGGAGACGACATCAAGACAAGGACCAGTTGGATGATCTTGAAGAGTGAGATAGACGGCGAACCCCTCCCAGAGTAcctgctggaccccaggaagtctACTTGCAGCCTGCCCACTGACACCTCCCGGACCAACTTCCCATACAATAAGTGTGCTTCCCTGCCAGGATATGGAAGGAATGGCATATACAAGGAGGTTGCCGACCATGTTGAGGTTGACCCAGACCAGCAGGACTCCCACAGCTGGGGAGGAATGAGAGAGTACAAGGTGTACCCCTATGAGGTGCTGTCTGTGACCCACAGGGTGAGGGTGAAGCTACCCAGAGATGTGGACCGTACCAGACTGGAGAGACACCTCTCCCCAGAGGACTTCCACCATGTGTTTGGGATGACCCTGAATCAGTTTGACCGCATGGCTCTGTGGAAGAAGAACGACATGAAAAAGAAGGCACGCCTTTTCTAAAGCCAAGCAGGAGAACGGGAGAAAAATCATTATAACGTCTCCAGTCTACAACGTCTGTCCTGTctggaagaaagaaaaaaacatctGAAATAATCTACATATGCACCGTTACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2006805 lncRNA upstream 39865 54197051 ~ 54197649 (+) True G1752724
TU2006744 lncRNA upstream 147829 54087684 ~ 54089685 (+) True G1752664
TU2006719 lncRNA upstream 163347 54072150 ~ 54074167 (+) True G1752639
TU2006727 lncRNA upstream 187284 54049985 ~ 54050230 (+) True G1752647
TU2006715 lncRNA upstream 210981 54025647 ~ 54026533 (+) True G1752637
TU2006814 lncRNA downstream 1506 54344087 ~ 54348175 (+) True G1752727
TU2006901 lncRNA downstream 17945 54360526 ~ 54360979 (+) True G1752798
TU2006918 lncRNA downstream 71595 54414176 ~ 54415043 (+) True G1752814
TU2006966 lncRNA downstream 171046 54513627 ~ 54515753 (+) True G1752853
TU2007062 lncRNA downstream 361488 54704069 ~ 54704901 (+) True G1752942
XM_036958230.1 mRNA upstream 34612 54199722 ~ 54202902 (+) True si:dkey-219e21.4
XM_021578253.2 mRNA upstream 166971 54067452 ~ 54070543 (+) True LOC110500729
XM_036958191.1 mRNA upstream 346187 53736005 ~ 53891327 (+) False LOC110500727
XM_036958234.1 mRNA downstream 6763 54349344 ~ 54508277 (+) False LOC110500891
XM_036958233.1 mRNA downstream 74755 54417336 ~ 54508277 (+) False LOC110500891
XM_036958232.1 mRNA downstream 74757 54417338 ~ 54508277 (+) False LOC110500891
XM_036958235.1 mRNA downstream 74762 54417343 ~ 54508277 (+) True LOC110500891
XM_021578271.2 mRNA downstream 612966 54955547 ~ 54960002 (+) True LOC110500744
TU2005860 other upstream 980913 53251749 ~ 53256601 (+) False LOC110500722
TU2005669 other upstream 1265131 52962449 ~ 52972383 (+) False G1751699
TU2007280 other downstream 658998 55001579 ~ 55010870 (+) False G1753100
TU2007277 other downstream 665745 55008326 ~ 55011678 (+) False G1753100
TU2007265 other downstream 665853 55008434 ~ 55011678 (+) False G1753100
TU2007279 other downstream 665853 55008434 ~ 55011678 (+) True G1753100
TU2007604 other downstream 1248024 55590605 ~ 55591140 (+) True LOC110500754

Expression Profile