RNA id: TCONS_00050730


Basic Information

Item Value
RNA id TCONS_00050730
length 2195
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_025862
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59899452 ~ 59947208 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGAAAGTGACGGCATTCCCGGAAGTGTGTCGCTCTCTGGCATCGCCGCCGCTCCCTCATCGCGCCATTGAGAAGTCAGGGAAGCTTTCTCTAACCTATTGACTCGCAGTACCCGCAGGTCCACGCTGTCCATCATGGCCGAGCAGGAGCCCACACCAGAGCAGTTAGCCGCTATCGCAGCCGAGAACGAGCAGGGGGAATCTGTGAACTACAAGGCTCCGGCGCAGAAGAGCCTGCAGGAGATCCAGGAGCTCGACCAGGATGACGAAAGCCTGCGCAAGTACAAGGAGGCGCTGCTGGGCTCCTGCGCTGTGGCTGCAGATCCCAACGCCCCCAATGTTCAGGTGACGCGGCTCACGCTGATGTGCGAGACTGCTCCTGCGCCGCTGGTCCTAGACCTGCAGGGTGATCTGGAGTCCTTTAAGAAGCAGTCGTTTATACTGAAAGAAGGAGTGGAGTACAGGATAAAGATCAGCTTCAAGGTAAACAAAGAGATCGTCTCCGGGTTGAAGTATGTACAGCAGACCTTCAGGAAAGGGGTGAAGATTGATAAGTCCGACTACATGGTGGGCAGCTACGGGCCCCGGCCGGACGAGTACGAGTTCCTGACGCCCCTAGAGGAGGCACCCAAAGGCATGCTGGCCCGCGGCACCTACAACCTCAAATCCAAGTTCACCGACGACGACAAGCACGACCACCTGTCCTGGGAGTGGAACCTGAACATCAAGAAGGACTGGAAAGATTGAGCCCTGTTTACCTTCTTGCCATCCTCCTATTCCCCCCCCCCTTTCTTCCTCTTCCAGTTccctccatcatcatcatcatcatcattgacaTCATAGTCCTGGATTAACTGATTTAAAGGAAAAGGATCTTTCTCACTCCGTCCACTTTCCTGCAGTTCCCCCCCCTCATCTCTTCCCTCCCCTTCCTCCATTTCCCCAACAAGTATTGAGGCTTTTCATGAAAATATATatgtgaaaacaaacaaaaacgtgCACAATCCATATtttgtgttttggtttgtttgtatataaaaggtaaaaacagaggagagaaaaaaatattcaacaaaaaaaaaataatagttcaCCTCATGGATACTTTCTTTGACATGGTTGCTATTGTAATCTTCACCGCCCTGCCTTCCTTCTGTGTCCCTGTTTATCCCGCGTCATTCCTTCCTTCTCCGACATTCCTCGTTTgtctgtgtgttgttgttttttaaccatGATCTGCCTTTATGAGTGAAATGAGAGATTTGCTGATATTTTGCCACTGGCATTCCCTCACAACTCAAGTTTGCCTTTTGTGGGAACGTGTCTCCGATGCCTTTGAGATGAGCCTTGGGTTAGCGTAGCATGGGGTTACCTGTAGAATAGCAGAAGCGTTAGCAAGCGGGACTTTTCTTGGCTCCCGGTATGAATGTGTGCGTGTCCTAATATGGTTTTAGCTATGTAGGGTTTGACAGAAGATTTCGCCTTGCCCTGCTCTGATTGTGTAGGGTTTGTTTTCGTGTATCCATTTCATCGCCATGTGGCCTTAAAGTGAATCCTGTAGCAAAGACACTGAGGAGCTGCCCATGTATTTTTGAGGCGATACTCTCGAGGAACCAGTCTGCTGCCTCGTTCAATTAGCTCGATTTCAGAATGGACCAAATGTGAGGGCCCGTAGAAGTTAGTGAAACCTTCAGTCATCCCGAACCTCCTGCTTTCCAAAGACAACTGGTGCTTCGTTTGCAGAATGTGCCCTTTTGCTTTGTGGCTTGCCGATTAGGATGTTTCAGAAAGCCGAAGAAGGGCTGTGCTTTCACTAACCAATCTCAAGTATTGAACTACTCAACCTAAAAAACGACCAAACACCGTAGACCGTGCCTCCAGTATTGACGAGCTGCTCTCCGCATGTGTAAACCTAAAGGGAAGTTTAAAAGAGGTGCGTTTGAAGCAGATCTGAAATCAGCTATAGTCCAGGTGTAGTCTAACCTCAGCGTTCAAACAAGAGAAGAGAGGATGTGCCCATGCATCACTGTACTGTTTCACACATGCTTTTTCTTTCTTTGGCGACATCGTCCGCTTATAACTAGCTTGTTGTTGTTGGACCAGAATGCTGCTGTGTGTCTTCATCTGTTTGTACTTCTCTCGGCGATGGCTGGAGATTACTTGTTCACCTGTGTCAACATTAAAGTGTTCACAAC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005094 Rho GDP-dissociation inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2816 Predicted to enable Rho GDP-dissociation inhibitor activity. Acts upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol and membrane. Is expressed in retinal ganglion cell layer. Used to study nephrotic syndrome. Human ortholog(s) of this gene implicated in nephrotic syndrome type 8. Orthologous to human ARHGDIA (Rho GDP dissociation inhibitor alpha).

Ensembl:

ensembl_id ENSDART00000064311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052394 lncRNA upstream 9186 59883086 ~ 59890266 (+) True XLOC_025861
TCONS_00052393 lncRNA upstream 12151 59880935 ~ 59887301 (+) False XLOC_025861
TCONS_00052392 lncRNA upstream 675256 59212160 ~ 59224196 (+) True XLOC_025856
TCONS_00052391 lncRNA upstream 871615 59024934 ~ 59027837 (+) True XLOC_025853
TCONS_00050720 lncRNA upstream 932355 58961904 ~ 58967097 (+) False XLOC_025851
TCONS_00052835 lncRNA downstream 90342 60037550 ~ 60043897 (+) True XLOC_025865
TCONS_00052836 lncRNA downstream 119180 60066388 ~ 60067768 (+) True XLOC_025868
TCONS_00052837 lncRNA downstream 409006 60356214 ~ 60357972 (+) True XLOC_025870
TCONS_00052838 lncRNA downstream 435914 60383122 ~ 60401867 (+) True XLOC_025871
TCONS_00052395 lncRNA downstream 441041 60388249 ~ 60388895 (+) True XLOC_025872
TCONS_00050729 mRNA upstream 7611 59880317 ~ 59891841 (+) False XLOC_025861
TCONS_00050728 mRNA upstream 7611 59880317 ~ 59891841 (+) False XLOC_025861
TCONS_00050727 mRNA upstream 22591 59864872 ~ 59876861 (+) True XLOC_025860
TCONS_00050726 mRNA upstream 36655 59851537 ~ 59862797 (+) True XLOC_025859
TCONS_00050725 mRNA upstream 77024 59784632 ~ 59822428 (+) True XLOC_025858
TCONS_00050732 mRNA downstream 60495 60007703 ~ 60016670 (+) False XLOC_025863
TCONS_00050733 mRNA downstream 60495 60007703 ~ 60016714 (+) False XLOC_025863
TCONS_00050734 mRNA downstream 60501 60007709 ~ 60016139 (+) True XLOC_025863
TCONS_00050735 mRNA downstream 86986 60034194 ~ 60103938 (+) False XLOC_025864
TCONS_00050736 mRNA downstream 87013 60034221 ~ 60036485 (+) True XLOC_025864
TCONS_00050717 other upstream 1188697 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 1729038 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 1900893 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 2069533 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 2260004 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000351_00655091_00691711.mRNA True 1741 mRNA 0.50 11 CI01000351 655025 ~ 692054 (+)