RNA id: TCONS_00050725


Basic Information

Item Value
RNA id TCONS_00050725
length 5360
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_025858
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 59784632 ~ 59822428 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCGTGTGTGTTCAGCGAGCGTTCAGAATCTGCGTCACGTTCACCTGTGAGGATGGGAGCGGGTCTGCTGTGGCTCGGCCTGGCCGGACTGTGGCAAGCGCTCGGCACGCGGGCAGCGATCACCATCGATCAGGTGAGGCTGACTGTTCATCCAGGTAATGAAGTGGTCAGTGGCACTAATCTGATCCTGCGCTGTGAGGCTGATGTCAGTCACAGCCTGTCCCGTCCACCCACGCACTCCTTCAGCTTCCTGCATAACGGACAGGTGGTCTACTCCAAAAACATCAGCGCCTCTGTGGTGGAGCGCACCTTCTCTCCGGCCCGCGTCTCCAACTCAGGCCAGTATGAATGCACTGTCCGCATTGAAGACAAGGCCAAGACAAGTAACAGGCAGACACTGCGCATCACAGGCCTTCAGACGCCCACGATGAAGGTGAAGTCTGACATCGTGTCTGAGGGGGAAGACATCATTGCCACATGCAGCGCAGCAGAGGAGACGGGCACGCTGATGTTTCTCTTCTACGAGGACAATCAGGAGGTCAAGAGTGAAGTTAGTAACACCAACACCATTTCGATCACGCTGACCATGAAGAAGCTCACTGATATCTATCTGCACTGCGCCTACATGGTTGTAAGGCACCCCACTGCAGGCTTCTCCAACAACAGCAACACCGTCAAAGTCTTTGTACGAGATCTTAAAGAGCTCATCCCACAGATAAGCTTTTCACCCAGTGCGAGTGTGGTCGAGGGCGAACGGGTGGCGATCAAATGTGAGGTTCAGGATCGCTCAGCTCTGGAGATGTTTCTCACCAAAGACGGCACCATACTTCACAGATTTCACACATCCTTTACATACAGCCTCACGGTGAGAGAGGAGGATTCTGGAGATTATGTGTGCAAAACCGAGAAAGGGAGCGTGCAGAAGAAGGTAGAAAATCGACTCAGTGTAACAGCACTGTTTACAAGGCCAATCTTGACAATGAGCCCATATGAGGTTTTTGAAGGGGAATTCTTCAAGCTGAACTGCAGCAGTTCAGTGATCTCAAACAAGATCAGCAAAGAAGACATCAAGTATGTTTTGCTTAAAGATGGTCAACGCATTTCTACAAATCCCATCTTTCGCAAATCTGCAAGCCTGGTCAACAATGGCAAATATTCTTGTTGGGCCATGGCTAGAGGTGTTAACAAGACCAGCCTGCCACACCTTTTAAAAGCTAAAGTGCCTGTTTCAGTGCCAGTCTTGAGTGCTGTTGGTAAAGTGATTGTTGGTCGACCTTTCAAGGTTTTGTGTGAGGCTAAGAACGGAACGCTTCCAATAACCTACACCTTACTGAAGGACCATACTCCAGTGGATAGCAGAGTTGTCAATGGAACTGAAAGAGCGATCTTTACCATCACCTCCATCAGATTTCCAGGAGAGATCGACAGCTTCACGTGTCAGGCTTATAACGGACCAAGGTTCATTAGGACCAGCGACGCTTTAACAGCACCAGTCATAGTTCCAGTCTCGGAGCCCATGCTGAAGCCCCAGGAGACGACGGTGACCGAGGGCTCGGATCTGGTCCTCACCTGCAGTGTCCAGGAGGGCTCTTACCCAATCACCTTTACCTGGTACCATAACAAGCTTCTTCTGCTCTACTCCAGACAAGAGGTCCAATCCTCAAAAGGAAGTCACATCGTTAAAATGATCACGCGAGACCAAAGAGGAGACTACCACTGCGAGGCGTCCAATCAAGCCCTTGAAACCAAGCAGAGTAAACCGGCAAGAATTGGAGTCAGTTTAGCGCTGTGGAAGAAGGCTCTTATCGGAGTCCTCTGTATCCTGCTGTTGGTGGCGATTGTCGTAGTCCTGACAGTCTTTTTTAAGAAAACGTCACATCCGCGCAGAAAAAGGCAAGCGACCGAGCTATCAGTaaaaCCTTCAAGACCCAAATCAGGAGACCCCATGAGAATGAGCCTCACACTCGATATTGAAGACAACACCGTCCTCAATGGAACTCCCTGTGTGATGGGCAGGAATGTGTGGAGCGAAAATGCATCTGGTTCAGATTCTGACGATCACACCGATGAGGAGTCTGAGCTGGTTCAACCAGAGCAGGCAGATCCCAGCAGAGaaaTTCCCATGCCGAAAAACGCGGAGGATGAATACATCATCCAGCACACAGAAGTCCAGGTGTCGACACCAGgagTTCCGGAGCAGGCAGAGGGCCAGGCGGCTCTGGAGTATGTGCAACTCAACAACAGTGAACAGGAGACCCATGACACATAATTTATTCAGCTTTTCCACCGACTGAAGCTGATTTTCCGTTACCAAGCTCATGCTGAACATTTTTCATATTggattgtttgctgttttgtgatGATTGTGTGTCTAGATTAAAATCTGAGCATCAGATCAAGTCTTTTGTGGTTCTGCTTTGTTTTTTCCTTATTGGCGTTGTTTTTCTAAGGACTGCGAGGAACAGGAAAGACATCTCTTCTTTCAGGGTGTCACTGAGCCGCTGGAAAAAGGAAGTCTTTAAAACATAAGCCGTTCAAAAATGTCCTTTTAGGATCTGAAGCCTCTGCATATCTGTTTGAAATGTCCTTAGGAAAAGCTGCTGTAACATTATTGCAAGAATATCTGATGAGTTTAAAAACCTttcgaattttttttttaaggtttttattttttaaggttttgaACTGCGCTGATTAATGTTGTAAACATTCTGAGACTGAAATGTGAATGCTGTCATTAAAAGTAccagcataggctcattctgaaactgtacctctatatacatttctggagatcgtgaattaagTAGCTAGAAGCTGTATTTCGCCTTTAGGTCAAACGTTACAGGACAGTATGCACGCTTGCCTCCATATgaatggcttttccactgttacctgTTACAAATTGACGTGACGTGCCGTTGACAGTTATGACGGGTTTTGAGTCCAGCGAAGAACAGTCGCAAGAAGCAGGTAAGCCAAaagccaaaacataaaatagacCAGTAAATAGAGCTtttgattgcttttgaaaacactatcagttgggtttagggaaggaggacggtgggtcagttgatcagtcagtcagtcagtcgacagcggcctctggtgaatttatgcaagaagagcagAAATTTgtgatctcaaaaagcgtacacagcagcctctggtggatgctcctgggatgtatttggcgctctccagaaatgtatataagggtacgtAATTAAAATGAACCTGGGTTGCAAAGAACAAGGCATTTTTtatggtacactctcagaaataaaggtaagacTTGTCACTGGGGTAATACCTTTTTGAAAGGTAAACacttgtacctaaaaggtccatattaataccctTAGGGTACATAATTgtacctaaaatgtacaaaagtgttcctcttaatatttttaggtactaatatatacttttaaggtaccaatatggactttTCAagaacaaatgtgtaccttttgaaaaggtaccaccaaaGTGACaacttgcgtacctttatttctgagagtgtatacagGTTCTGTTTTAGGACCTCTGCTCTTTTAATTATACTATAAATGTTACCTTTCGGTTGTTTgatctaaatagttttttttatgtttttaaaggtttttaattttgacatttttgaactgtaatgctgcgttcacaccagacgcggcatgtgcgcgagtgatttacatgttaagtcaatgcaaacgcgcgaatagacatcctgtggcgcgatacgcacgaatgacgagaattgcgcggtgcgcatggcgcgaattgagcgttttgcgcgtttgatgcgCTTAATGCGCGTTTCGCTCGAATCACTcgcgttcgaaaatctgaacttcagcggacattcgcgccgcgttaaccaatcaggagcttgctcttgtgggggagtgattgtgacgtatcgcttgttgtcggtgtcccaggggaaatcccccagcagacaccgacaagaagttcatcaaactgggcttggctcagtcagaagcaccgctgaaaacctccatcagccaggttcagtttctggaggagtttatgagctcacagagctggatgcacctctgaaaggatgtagtggactcaaacACAactctaaacgtatcgacgctgtttatcatccttcataaagcacataaacactgttattttcttcataaaatccatgttagccctttagctatgaagctagagtcatggggcagacagaagccctgcccatcacgcgaatccgcgtctgttttgtagtgaatttgacgcgcgaatgaagcaagtaacctcaaatgtttacGTGACTAATTACGCGCGAATAACGCGATTTATccgtgcgttccgcgtctggtgtgaacacagcataaagtTTAATGTTGTATAAACAACCTGAGACTGAAATGCTGAACTTCaggattcattttatttaaagtctattcattattttttgtccTTTTACTTTGATGTTTGTTCTGTTGTGAGGAACACATTAAACCAACTAGCTCACCCACATCTCGATGCCGACTGTCCTGGCTTTAACCTGCAAATCCTTCAACACAGGACCACTTGGGGAAAAGCAATTATTCTAAAGCAGAGCCCCTCAAAAAGTGCCCATCAACACATTTCAGAACTAAAAGCCGCTGATAACTTTTTGGTATAGTAGTTTAATGTAGTTTAAGAAATATTCAAGAAGAGGTTGAACGATTTTGATCAGCTTTTCTTGTCATAAACCCAAAAATCCACTCATTTCTGTGGCAGAATGTGATTTTTTCTTACTTGGTGTACACCATGGTTCTGTTTTAGGACCTCAGCtatttttcagtcattcattcattcattttcttctcggcttagtccctttattaatctggggttgccacagcagaataaaccgccaacttatccagcatatattttatgcatcggatgcccttccagctgcaacccatctctgggaaacatccatacacactcattcagactattacattacagacaatttagcctacccaattcacctctaccacgTCTTTTGACTggagaagaaacccacacgaacgcaggaagaacatgcaaactccacacagaaacgccaactgactcagccgaggctcaaaccagtggccttcttgctgtgagccaacagcactatctactgcgccaccgcgtcgcacCTCTGCTATTTTTACTTTAATATGATGTTTTTAAGACTGAAGTGTTGGATAATAATGTTTTACTTCTCTATTTACTCTAGTTGTTCAATTCGGCAAtatattatgaattaaatatttcattttccaAAATTATTACATGCACGTTGTCATTGGGGTCCTTCTCTAGATTTTTG

Function

GO:

id name namespace
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04670 Leukocyte transendothelial migration
ko05144 Malaria
ko05418 Fluid shear stress and atherosclerosis
ko04090 CD molecules
ko00536 Glycosaminoglycan binding proteins
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-130530-689 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in cell surface receptor signaling pathway and cell-cell adhesion via plasma-membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in coronary artery disease; coronary stenosis; myocardial infarction; neuroblastoma; and psoriatic arthritis. Orthologous to human PECAM1 (platelet and endothelial cell adhesion molecule 1).

Ensembl:

ensembl_id ENSDART00000084729

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052392 lncRNA upstream 560436 59212160 ~ 59224196 (+) True XLOC_025856
TCONS_00052391 lncRNA upstream 756795 59024934 ~ 59027837 (+) True XLOC_025853
TCONS_00050720 lncRNA upstream 817535 58961904 ~ 58967097 (+) False XLOC_025851
TCONS_00050719 lncRNA upstream 817535 58961904 ~ 58967097 (+) True XLOC_025851
TCONS_00052834 lncRNA upstream 927149 58835461 ~ 58857483 (+) True XLOC_025850
TCONS_00052393 lncRNA downstream 58507 59880935 ~ 59887301 (+) False XLOC_025861
TCONS_00052394 lncRNA downstream 60658 59883086 ~ 59890266 (+) True XLOC_025861
TCONS_00052835 lncRNA downstream 215122 60037550 ~ 60043897 (+) True XLOC_025865
TCONS_00052836 lncRNA downstream 243960 60066388 ~ 60067768 (+) True XLOC_025868
TCONS_00052837 lncRNA downstream 533786 60356214 ~ 60357972 (+) True XLOC_025870
TCONS_00050723 mRNA upstream 616808 59117136 ~ 59167824 (+) True XLOC_025855
TCONS_00050722 mRNA upstream 731638 59051503 ~ 59052994 (+) True XLOC_025854
TCONS_00050721 mRNA upstream 794816 58984463 ~ 58989816 (+) True XLOC_025852
TCONS_00050718 mRNA upstream 949455 58833306 ~ 58835177 (+) True XLOC_025849
TCONS_00050712 mRNA upstream 1119308 58663942 ~ 58665324 (+) True XLOC_025840
TCONS_00050726 mRNA downstream 29109 59851537 ~ 59862797 (+) True XLOC_025859
TCONS_00050727 mRNA downstream 42444 59864872 ~ 59876861 (+) True XLOC_025860
TCONS_00050729 mRNA downstream 57889 59880317 ~ 59891841 (+) False XLOC_025861
TCONS_00050728 mRNA downstream 57889 59880317 ~ 59891841 (+) False XLOC_025861
TCONS_00050730 mRNA downstream 77024 59899452 ~ 59947208 (+) False XLOC_025862
TCONS_00050717 other upstream 1073877 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 1614218 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 1786073 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 1954713 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 2145184 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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