RNA id: TCONS_00004848


Basic Information

Item Value
RNA id TCONS_00004848
length 546
RNA type processed_transcript
GC content 0.45
exon number 2
gene id XLOC_002605
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8675890 ~ 8677828 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTCAGCATCTTCGGATGCAATCCTGATGAGGATTGAGGAGCCGAGGCAGATCCATGAGTCAATGAACCAGGAGGTGCAACAGCATGAGCCTCAAGTCACAGATAAACAGAGGTCCCCCATGGCTGTGAAGCCCATAGAGGAAGGACATACAGAGTCTTCACAGGGATCTGCAGTTTCAGCATCACTGCCTGTCTCCAGCAGCCAGACTGAACATGTGTCCTTCAGAATGTTTACTGCAAAATGTGCTTTGACCACAATTTCTCTGCCAATGGACAAAAAGTTTAGTGACATCCTTATGGAGCGGAGGCAGAAGTGGAAGGAGGAGCTACGTAGACAGAAGCGGCAGCAGAGATCCCCAAATTCACCACAGGGAACACCTGTAACTGACACTGCAGACGTGGACCATTCAGTTCCAGTGAAAAAAATCAAAACCAGTCATCAGCAGCTGTCGATTGACGATTTGTGCAGAAAATTTGCTGATTTATGTTTGTAGATTGTGTTTGTGTATTGTGCAcatcttaaataaatatattcccataaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000138645

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005998 lncRNA downstream 18213 8638921 ~ 8657677 (-) True XLOC_002603
TCONS_00005997 lncRNA downstream 54347 8618718 ~ 8621543 (-) False XLOC_002602
TCONS_00004846 lncRNA downstream 54617 8618849 ~ 8621273 (-) True XLOC_002602
TCONS_00004840 lncRNA downstream 406057 8266271 ~ 8269833 (-) False XLOC_002599
TCONS_00004828 lncRNA downstream 629127 8045417 ~ 8046763 (-) True XLOC_002593
TCONS_00005999 lncRNA upstream 163870 8841698 ~ 8858549 (-) False XLOC_002606
TCONS_00006000 lncRNA upstream 163870 8841698 ~ 8858568 (-) True XLOC_002606
TCONS_00006001 lncRNA upstream 467680 9145508 ~ 9146642 (-) True XLOC_002612
TCONS_00006002 lncRNA upstream 512269 9190097 ~ 9191755 (-) True XLOC_002613
TCONS_00004863 lncRNA upstream 586845 9264673 ~ 9269249 (-) False XLOC_002614
TCONS_00004847 mRNA downstream 3070 8660654 ~ 8672820 (-) True XLOC_002604
TCONS_00004845 mRNA downstream 241074 8416117 ~ 8434816 (-) True XLOC_002601
TCONS_00004844 mRNA downstream 317494 8298984 ~ 8358396 (-) True XLOC_002600
TCONS_00004843 mRNA downstream 380548 8274075 ~ 8295342 (-) True XLOC_002599
TCONS_00004839 mRNA downstream 380596 8265972 ~ 8295294 (-) False XLOC_002599
TCONS_00004849 mRNA upstream 269400 8947228 ~ 8956742 (-) False XLOC_002607
TCONS_00004850 mRNA upstream 269400 8947228 ~ 8957480 (-) False XLOC_002607
TCONS_00004851 mRNA upstream 269402 8947230 ~ 8956779 (-) False XLOC_002607
TCONS_00004852 mRNA upstream 269520 8947348 ~ 8955413 (-) False XLOC_002607
TCONS_00004853 mRNA upstream 277459 8955287 ~ 8956973 (-) True XLOC_002607
TCONS_00004819 other downstream 716052 7929771 ~ 7959838 (-) True XLOC_002588
TCONS_00004811 other downstream 783206 7870627 ~ 7892684 (-) False XLOC_002585
TCONS_00004813 other downstream 784024 7881329 ~ 7891866 (-) True XLOC_002585
TCONS_00004790 other downstream 1163767 7512008 ~ 7512123 (-) True XLOC_002575
TCONS_00004786 other downstream 1323780 7290947 ~ 7352110 (-) True XLOC_002573
TCONS_00004855 other upstream 338893 9016721 ~ 9016837 (-) True XLOC_002609
TCONS_00004856 other upstream 359530 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004859 other upstream 463737 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004869 other upstream 856954 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004879 other upstream 1641480 10319308 ~ 10332427 (-) False XLOC_002623

Expression Profile

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