RNA id: TCONS_00053017


Basic Information

Item Value
RNA id TCONS_00053017
length 1847
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_026322
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23663144 ~ 24050854 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctttttttTGCAAATGAATaacataacattttattaaagaatTGTTCAACAACCAACTCTTAACAAGGAAATAAAAGTAGTTACAAAGGACAAATGAAGTTCTCAAAATGTTTCGCTATATTCCGTCTAATTCTCGACTATGCGGGAACGGTTTGATTCCGTTCTTGTGCCCCCTGTACAAGTCAAGACATTTTTTATACAAGGGTAACATAAACCTACATATTTCTAAAATACAAGAACTAAAAATTAATTTGTTACAATGACAAGAACACAGCGTCTTTTTTATAACAGGTAGAtactaaaaaagtacatttttatcgATATAAATACATGGggataaataatacaaaaaagaaaGTATTTAAACTGgctataacaaataaatatatatttatgaatgttCACTTGAACACACTTAGCGAAAGACGCTGATTGAAGGTCTTCCGATTCAAAATAAGATTTACTTTTCTTCCTCACCCATTTAATGTAAACTCTAAGTGCAACAATGATGCCCAGACGAGAGCGCAGTAGGCGTAAACAGAGAAGTCTGCGCCATAGCTTGGTTTCCCGGACATGCATTTTGTTCAAATATACCCTGTATCCACGTTAAATGAAGATATGAGAAAATGTGGGCTTTTCATATTAGTTTGGACTAATGTAGGCAAACCCAAGAACTGGGAAAGGAGTATAAGGGGAAGGGAGGGGGAAGTGAGTTGAGAATGAGGAAATGAGCTTTACTTTACTAGTTTTCTCAACTCTTCTTTTTACCCTGTCAAAGCCATATCAAAAATCAATTTTCTTCTCATTAATAGTGATAGGTAGCATAGTGTAAAACGCAATTTAAACAGATGAATATCTTGATCACCTTGTCTTGCTAAAGACATGGTGCAAATCTGCTGCAGTTTTGGGatcaagttatttaaaaaattgaagtttttgatacatttaaaaaaagaggtatGTGAAATAAGGGTAGTGGACGAAAACAATCCAGTGGTTTTCTTGCACCAGTAAgtttatatatttactatatCGTACTTCCCTCCAAAGAGTGAGAAACACAAACATTTAGGATGATGTAATGAGGTCATACAGCTAGACAGTCTATTCCTTGGCATAAACAAGCCACTTTTCATGACATGTAttgttttaaaggggtttttAGACCTATGGATACTAAATTCAGAGATGTTCACATATGAATGGAAGGACAACATTGACACAAACCGGTGTCCTAGTCATGGCAAGAAACCACTGGATCATCTTTTTCAACCCCATTGCATCGCCCCATGGGTTAGTCTGTTTTGtcttcctttcattttttttcttctttttaattttttttttttgtccaaaccTGCTACAGATGAGTCAACTTGGGTGCTTCTTGGATTCTACCCTGAGAAGGATGGTGTGCAGACAGATCCGTGTATGTCGGATGTGGGTCACAAGGTCCATGGTGCTGGTTCGCTGACATCTGTGTGGCACCGTTGTAGTCCATGCTTGCCGACTGGTGGTGTGGTAGGTGATTGAGGCCATACATAGAAGGCCCAGTGGCAGGCATGGCATCAACATAGTTACCTCCTACATACACAGGGCTACCCTGCATGTTTGGTGTCCCATAGTTGCCACTGTTACCCTGTAGCCCGTGTGGGTCATAATCCGGTGGTGTGTTTCCATACTTCTGTTGGGGTGGGCAACCTTTCATTGGGTTCTGATAGGCTGTTGACATGGCGTATGCATTTTGATGGGGTTTGTTAAAAGATGGTGGAGAGGGAGCATCGTAACTGCCCATTGAGTGCATAGAGTTCATAAAACCAGCTGAGGACTGCATTGGAAGAGGTGGA

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006400 tRNA modification biological_process
GO:1901836 regulation of transcription of nucleolar large rRNA by RNA polymerase I biological_process
GO:0042790 nucleolar large rRNA transcription by RNA polymerase I biological_process
GO:0008033 tRNA processing biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053016 lncRNA downstream 3295 23740351 ~ 23744279 (-) False XLOC_026324
TCONS_00051334 lncRNA downstream 6909 23740362 ~ 23740665 (-) True XLOC_026324
TCONS_00053011 lncRNA downstream 37000 23701286 ~ 23710574 (-) False XLOC_026322
TCONS_00053010 lncRNA downstream 43856 23701286 ~ 23703718 (-) False XLOC_026322
TCONS_00053009 lncRNA downstream 59287 23686198 ~ 23688287 (-) True XLOC_026323
TCONS_00051336 lncRNA upstream 14449 23765763 ~ 23859753 (-) False XLOC_026322
TCONS_00051338 lncRNA upstream 183568 23934882 ~ 24050083 (-) True XLOC_026322
TCONS_00051360 lncRNA upstream 1380706 25132020 ~ 25135109 (-) True XLOC_026339
TCONS_00051366 lncRNA upstream 1519405 25270719 ~ 25273434 (-) False XLOC_026342
TCONS_00051380 lncRNA upstream 1931570 25682884 ~ 25699598 (-) False XLOC_026348
TCONS_00051330 mRNA downstream 103744 23641938 ~ 23643830 (-) True XLOC_026321
TCONS_00051329 mRNA downstream 103823 23641935 ~ 23643751 (-) False XLOC_026321
TCONS_00051328 mRNA downstream 143178 23599290 ~ 23604396 (-) True XLOC_026320
TCONS_00051326 mRNA downstream 150765 23584663 ~ 23596809 (-) False XLOC_026319
TCONS_00051325 mRNA downstream 151042 23581614 ~ 23596532 (-) False XLOC_026319
TCONS_00051339 mRNA upstream 321406 24072720 ~ 24093144 (-) True XLOC_026326
TCONS_00051340 mRNA upstream 450642 24201956 ~ 24205339 (-) True XLOC_026327
TCONS_00051341 mRNA upstream 563383 24314697 ~ 24338163 (-) False XLOC_026328
TCONS_00051342 mRNA upstream 566829 24318143 ~ 24337814 (-) True XLOC_026328
TCONS_00051344 mRNA upstream 686049 24437363 ~ 24456538 (-) False XLOC_026330
TCONS_00051315 other downstream 312573 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051313 other downstream 364966 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051290 other downstream 1570446 22161451 ~ 22177128 (-) False XLOC_026304
TCONS_00051287 other downstream 2130534 21616920 ~ 21617040 (-) True XLOC_026301
TCONS_00051260 other downstream 2749214 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051337 other upstream 66608 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051343 other upstream 651835 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051348 other upstream 994452 24745766 ~ 24745881 (-) True XLOC_026332
TCONS_00051354 other upstream 1328135 25079449 ~ 25086951 (-) True XLOC_026336
TCONS_00051368 other upstream 1522828 25274142 ~ 25275351 (-) True XLOC_026342

Expression Profile

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