RNA id: XM_036959067.1


Basic Information

Item Value
RNA id XM_036959067.1
length 3331
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110501709
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29500150 ~ 29589083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgtttttttttttttatacctaaaCAGGAGGAAGCATGCGCCAGAGCTCGCGGGAGAGAAAGAAGAGCGTTGACAGCAGCGTCGCATCTCCGTCTTTCGAGGTTTAAGTCAAAGGATTACAGCATCAATTATTTTCGTCCAGAGTCTATGAAAACTTCAGTTTGAAACGACAAATAGAAAACTGTTGGCTAAACCTGGGATCTATTTAGGGTCAAATCAGCCTAGCAGGCTAGTACTTCAGAAAACCGTTATTGGTATGGCGAGAAAGAGCATGTTGGTTAAGTGTATCCAGAGAGCGATGCTTTTACTTTGCTACAGTGACGGGTTTAGCAGAGGATAGATGGGATCCTATCTTTAACTGGGAGTCCTCCATCCAACTATCCTTCTCCTTATCACTCTgtcctgtcctggtctggtgtgcAGCCTGAGGGAGCTGTGGTTCTGATCAGACCTCTGGGAGGTAGACCCAGAGAGCGGAGCACACAGGACCTGCTATGGCCAGCGCAGCAGACGGTGTAGGGAGCCTGAGGAGCCTGAGGAGCCTGGGGCCGGAGCAGCACCTCAGTGTCCATGACCATGTGGTGAACGACCACGGAGCCTGGGCCACCGCCATGAACAACCTGGGCATCGTACCCATGGGCCTCGGCAGGCAGCAGCTGGTCTCAGattcTCTCTGTATCCAGGGTTTTGATCCAGGGCTGGGTCTCCTAGCTCCTATCAACCCCATGATGGCAGGTATCAGCctggtccctcctccccctgGTCCCCCCATCATCAAGGAGATCATCCACTGCCAGAGCTGCACCCTGTTCCCCCAGAACCCCAACCTGCCTCCTCCGTCAACACGGGAGCGCCCCCCAGGGTGTAAGACAGTGTTTGTGGGGGGTCTGCCGGAGAATGCCAGCGAGGAGATCATCAGGGAGGTGTTTGATCCGTGTGGTGACATCATCGCCATCAGGAAGAGCAAGAAGAACTTCTGTCACATCCGCTTCAGTGAGGAGTTCATGGTGGACAagtccctctacctctctgGCTACCGGATGCGTATCGGCTCCAGTACAGATAAGAAGGACTCAGGGAGGATGCACGTGGACTTTGCTCAGGCCAGAGACGACCTGTATGAGTGGGAATGTCAACAGAGGCTGCTGGCCAGGGAGGAACGACACCGACGCAAGATCCACGAAGACTTCTTCCGACCGCCCTCGCCACCTCCCATCATGCACTTCTCAGACCACGAGGCAGGACTGCTTGCGGAGAGATTGAAAGATGACCATAACTTCAGTGAAGCGACTGCGGTCCTGTTCACATGGATCGACCGTGGTGAGGTCAACCGGCGGTCGGCTAATCACTTCTACTCTATGATCCAGTCGGCCAATAGCCACGTCCGGAGACTGATGAGTGAGAAGGCCCAGcacgaggaggagatggagcTAGCCAAGGAGACGTTTAAAAACTCCCTGCTGGCCATACTGACTCAGTTCGAGCAGATCACGGCTGTGTTCACCGCTGCCTCCAGGCAGAAGGCATGGGACCATTTTACTAAAGCGCAGCGCAAGAACATAGACATTTGGAGAAAGCAGTGTGAGGAGCTGCGGAACGCCAACAGTGAGGAGATCATGGGGATTCGccgggaggaggagatggagatgtcTGATGATGACTCGGATGAGAGCCCCTGTAAGAAGATACGTAGGGAGGACAACGGTGTGTGTGGCCAGTCTGGGGCCTCTCTGAGGGAGGAGAATGACTCTCTGCGCTGGCAGCTGGATGCCTACAGGAACGAGGTGGAGCTGCTGAGGAAGGAGCAGGGCAAGGCCTGCCACCCCGACGACCCCGAACactccctcaacacacacacacacctgctacaGCAGAGCATGCACAACATGCATCAGcaacTGCTGAGTCTGCAGGATCAGCTGAGGAGTAAGGAGGTGGAGCTGGAGCAGGCTAGAAACGAACACAGATACCTGGAGGGAGAGGTCCTAGCCCTGAGAGACAAGATGCTGACTAATGGGGATGTAGTGGTAGTGGAGGGGACCAACGGAGAAACACCTGAGAAGgtaGTGAACGGCTATGCCACCACTCTGTACCCCAGCAGAGACAGGAGGAGTGAAGCAGCCATGAGAGGACCCCTcacatcagagagagaggctCTGCTACTGGGCATCATATCTACCTTCCTCCATGTCCATCCGTTTGGAGCCAACATCGACTATCTGTGGTCTTACATCCAGAGACTGGACACTACGGTGTCAGCGGGTGAGTTGGAGTCTCTGATGGGTCGTCTGCCCAGTGTCTTCAGACAGGAGCTGAGTGGAGTGGGAGCCACGCTGGAGAAACGCTGGAAGTTCTGTGGCTTCCAGAGCCTCGCCTCCATGTGACACAGGGACACAAACACATCACATGACCCAAGACACACACATGGCCTGACAGACCACGTGTGGTACAGGAACATACACACTTCCTGACCAGCCACAAAGCCTGGTGGACACATGAATAGAAGGCGTGTCAAATCCACAGACTGTGTTTGAACGTTGTGTGTATGTTATGTATCCATAGACATCCACAGTACATGGTGATGATTCTCAAACACAAAACAGACACTGATGGATCTTTCCGAGGTTATATCTTTGAGAAGGATTTGCTGACACGGAGGTAGAGGGAACCACACGGATCTCCACTCGATGCTGTATAACTAGATCCACGGATGTCAGCCAAGGAGGTCACAGAGCAGACATTCTCTATGGTAACCTAGTGACCAGACCCCAGCCAACAGAACCTCTCATTGACTGGAGTTGTGTGTGATGCCTatttctctgttccctctctttctctgttctctctctctctctctccctggagcAGTTGCGTAACTGATTTGTCAACAGCTGACTCCCACTAGGCTGGGAGGGATCCAGGAATATCGGACGGCTGCAATCGAAATATGGATGGGAATGGGGAAAATTTGAGAATTGGGTTACTGATTTATAACTGTAACCCTTGTTACCCCTCACGTCCAGTGTGTTGTGGGGCTTTTTGCTGTAAAACCCAGTTTCACACTCCAACAGGATTGAAGCATtagccagcctctctctctctgtctgtctgtctgtctgtgacccaGAACAGACTTTAGTAGCCTACTGATGACTGGTACTGATactgttgggttgggttgggactgtactgtaggtctcacCCTCTGGATGTCTCTCTTTGCTCTGGCCTTCTGTGTCCAGTGTGTGCTGTGCGTTCTGCCACTGTTTAATTGGTATCTACTCAtttaaattattatgttttctaaTGTAATAAAAGCTTTTTATCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056904 lncRNA upstream 5214 29494654 ~ 29494936 (+) True G1797349
TU2056881 lncRNA upstream 28137 29471774 ~ 29472013 (+) True G1797326
TU2056877 lncRNA upstream 32238 29467703 ~ 29467912 (+) True G1797322
TU2056876 lncRNA upstream 33815 29466109 ~ 29466335 (+) True G1797321
TU2056859 lncRNA upstream 51282 29448591 ~ 29448868 (+) True G1797304
TU2057028 lncRNA downstream 2823 29591906 ~ 29592130 (+) True G1797465
TU2057029 lncRNA downstream 3260 29592343 ~ 29592605 (+) True G1797466
TU2057044 lncRNA downstream 12651 29601734 ~ 29601996 (+) True G1797481
TU2057062 lncRNA downstream 31552 29620635 ~ 29620989 (+) True G1797499
TU2057064 lncRNA downstream 31922 29621005 ~ 29621503 (+) True LOC118943646
XM_021579446.2 mRNA upstream 72744 29340787 ~ 29427406 (+) False tsc22d1
XM_021579447.2 mRNA upstream 72744 29411533 ~ 29427406 (+) False tsc22d1
XM_021579448.2 mRNA upstream 72744 29421286 ~ 29427406 (+) True tsc22d1
XM_021579445.2 mRNA upstream 207575 29290937 ~ 29292575 (+) True LOC110501706
LOC110501705 mRNA upstream 235732 29260930 ~ 29264418 (+) True LOC110501705
XR_005038972.1 mRNA downstream 32029 29621112 ~ 29622074 (+) False LOC118943646
XM_021579458.2 mRNA downstream 269672 29858755 ~ 29872101 (+) True LOC110501715
XR_005038816.1 mRNA downstream 305043 29894126 ~ 29903673 (+) True LOC118943587
XM_021579460.2 mRNA downstream 323198 29912281 ~ 29915808 (+) True LOC110501716
XR_005038966.1 mRNA downstream 328690 29917773 ~ 29933035 (+) False LOC118943632
TU2055989 other upstream 489877 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 489877 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 489877 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 515924 28977890 ~ 28984226 (+) False LOC110502085
TU2054913 other upstream 1408034 28091565 ~ 28092116 (+) True G1795550
TU2057150 other downstream 155109 29744192 ~ 29744854 (+) True G1797582
TU2057325 other downstream 334474 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 911573 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1299578 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1299578 30888661 ~ 30891067 (+) False G1798397

Expression Profile