RNA id: XM_036959071.1


Basic Information

Item Value
RNA id XM_036959071.1
length 5546
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110501719
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30004681 ~ 30082509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTCACTGCATTCTGCACAGCTGTGCGAgcaagcaaagagagagagagggcgaggagaaatagaagagagagcgagaggggctgCCTGGTTCCCTGCACGGGCTCTGTTGTGGGAAATTGTGCTTTTAAACAGCCTTACGCCGATATGCATTCTTCAGTTTCTGGTGCATTACACGCGCAACAAGAAACCAACACGCACTCGGTTAACGTCATTAATAACGCAGTGTGAGATGGACGAGTCGTCTCTGTTGGATCTATTGGAGTGTTCAGTGTGTTTGGAGCGGCTGGACACTACAGCTAAAGTCCTGCCTTGCCAACACACCTTCTGTCGCCGCTGCTTGGAGAACATAGTCAGCTCCAGGAACGAACTGAGATGCCCAGAATGTCGCATCCTAGTCGGCTGTGAGGTGGATGATCTTCCCGCGAATATCTTGCTGGTCCGTCTGCTGGACGGGATCAAACAGCGGCCACGGAATGGAGGCAGTACCAGGCAGTCCCTGGTGGGGGGCGGGCGGTCTCAGGGCTGTGCAGCCGGGATCAGCGCATCTCCCCCGGGCAGTGGGATCAGGGACATGCCGGTGGCCACACGAAGCCCCCCGGTCAAGAGTTTAcctaatctaaccctaaccctgccctgTGGAAAGGCTCTCTATTCCTACGAGGGGAAGGAACCTGGAGACCTGCAGTTTGCAAAAGGGGACATCATCATCCTGCGACGTAAAGTTGACGACAACTGGTACCATGGGGAGCTGAACAGTTGTCATGGTTTCCTGCCAGCTAGTTACATCGCGTTGTTACGGCCGCTGAGCCAAACTCCGCCCACAGGAAAGGCCTTGTACGACTTTGAAGTCAAAGACAAAGATCAGGACAAAGACTGTCTGGCCTTCtcgaagGATGAGGTTCTGACGGTGATCAGACGAGTGGATGACAACTGGGCAGAGGGCATGCTGGGAGATAAGATCGGGATCTTCCCCATCCTCTATGTAGAGCTAAATGAAACAGCCAAACAGTTGATGGAGATTGACAAGCCGACATCCAATCCCGTCCCTGGCCCCAGCTTTGATCCGTCTCCCGGCCTCCCATTGGGTCCCTGCTCCCTTGGCCCCTCCCCTGACCCATCCTCTGCAGGAAGTGGCAATGGTGCCCTCCagaggcaagaggaggagagaagagggggagaggggaagaaaaaCGCTAAGAAGCGCCACTCGTTCACAGCTCTGAGTGTGACGCAGCGGACAGCCCAGCTCAACAACAGACACAGCATGGAGATCTCCCACCCTGTCCTCATCAGCTCCTCTGACCCCAGGGCTGCTGCACGAATACAGGACTCTCCCCCCGGTCCCCCCGGTCCCACTCCCTCCTCAGTCGGAGTTCTGGTTCCTCCCAGAATGGCTTCAGTCACCTCAGAACTGCTGGCTCAAGCCAAGGTCCAACTACCACTCAACATCTACCTGGCCCTGTATGCGTATAAGTCCCAGAAGGCAGATGAGTTGGAgctgaggaaaggagagatgtACCGTGTCACAGAGAAGTGTCAGGACGGCTGGTTTAAAGGGACCTCTCTACGCACCGCTGCTTCCGGAGTCTTCCCTGGAAACTATGTCACACCCGTGTCACGaGCTCCGTTTGCGGTGGGTGGTTCTCAGAGCTCCTGTCTCTCAGGGcaggaggtgggaggggtgggacAGGGGAGTAAGGCAGCCTCTCCCTCCTCCGCCGGCCCCTCCTCTGCCGGCCCCTCCTCCTCtcgtccctcccctcccccctcttccccccagTCTGCCGCTGCTCAGCTTAAGAACTGCCTTCGCTTTGGACAACAAACAGTTAACCAGACCCGCTCTGCCATGCAACTGGTCCACAGCCCGCCCTCCAGCAGCCCAGAGCGTCCCACACCCACCGTCTCTCCTCTCCGACCTCAGAAATCTTCCCCGTCGCGCTCCGCTGGTCAATCTGCTCGCCCAATATCCATGGTGTCCCCCggcccttcccccctctcctcccctgcttcgcgccctctctcctgcctctcttcgCCCCTCATCCcactttcctcccctctctcctgcctcaccCCTCCCAACGCCAGTGCCGCCCTGCTCAACGGAGAATCAACCAATCCCTTCCAACCGTCCTCGCCTGGCCCCTCCCACAGCAACGCCCCAAAACCAGAGAAGaaggagaagaaaggaggtcTGCTAAAGCTTCTCTCTGGAGCCGCGGCCAAGAAAAAGGCATCTCATTCTCCCCCGTCCTCCCCACCAACCCTCCCCCTGTCGGGTGCCGTCCTCCCACATCACACCCGCTCTGGCTCCTGTCCAATGGATGCCCATGGGCGTGCCGGGTCTTGTCCAATCGAGAGTGAGATGGCGGGGGCAATGGGGTTAGAGCTGCTGAACAGGAAGTCAGGATCCCTCGATCTCAACTTCCCCCGGTCGCCCCCGATGACCCGCCCCGGGAACGCACTGCTAGCTCTCCGGCCTGAACCCAAACCACTGTCCAGAGAGAGGTATCGTGTGGTGGTGCCCTACCCCCCTCAGAGCGAGGCGGAGATCGAGCTGAGACAGGGAGACGTGGTGTTTGTTCATAAGAAGAGAGAAGATGGCTGGTACAAAGGAACTCTGCAGAGGACTGGACGTACTGGCCTCTTCCCTGGCAGCTTCGTAGAGATCTTCTGAACaggaccgctacacacacacacacacacacacacacacacacacacacatacacgcagggATGGGCAAAAATGACAAAATACAATTACAAAAGATCAATGTATCTAAATGAACtacaaaataattgtattttataATCATTTGGGGGGCACCTATATGTGTCCTATTACACACAAGTGTGTAATGGAAATGTTTTTGAGgggcatatcccaactcccctgagacacccttaggggtcacggccagggtcgccATTGTACAGCTCCCCtcgagcaattagggttaagtgactTGCTGAAGGGCACAGCGACTGATTTTTTTCACCTTGTCGCCTCcagtattcaaaccagcaaccttttgatcactggcctaatgctctaacctcgaggctacctgctgccccaaatatatttaattaaaatacatgtattttgtatattaaaatacataaatacatttgcaaactcAGTGACGGATACAGAAACTGTTAATTTGCTATGACTgatgttgtttatctaccttagctGAATGTagtgactgtaagtcactctggataagtgtctgctaaatgactaaaatgctgTATATATGTGAAAATGAACACACCAAAACGAACTGCAAAGCACATTAGGTATTATTATTGGCCTTGTTTCGGGGTCATGTCTAGATGGGATATATCTTAACCTAATTCTCTTAACCTTCTACGTTAATTCTATTGAACCTGCTATGAAAAGTAcattttgacaaaagctgtatccttTCTAGACTTAACCTTGTTTCAgggcggagctcattagaataatacttgTCCATTATTACATACACGTTTAtatttagttcatttagcagacgctcttatgacaccatagtgccatcagtCTTCTGATACCAATGCAGGGTGAAAGGGGGATGGTGAACCGCTATAAACAAATGGTatagaaaagtattttgtattttgaaaatacaaattacAGCTCTCGAAAGTATCTTATTACAAAATACTGTACATTGGAGTGTAGTCCAGCCCAGTGTAATACAATTGACAAAATACTCAGAAGTCATTTAAATAGATATTTAAAATACACGTAACAGAAATACTGCCCATCTCTGCACACACGGCTACTCCAGCTCCAACCAGCCTCATAGGAGCGGGGGCCTTTATCCACACAGGACAGCTATGGCAGGGGTCCTTCATCAACCTCATCAATGACTAGTGATGTTGACATCATCAGGAGGCGCCAGCAACTATTGAAGGCACAACAAGCGGCACACTGTATTTTTCTATTGCTTCAGTGTGTATTTGTTTTAAACATCAGTGTCCGTATGAATGTGTGGTATGGCTAGAGACATGCCGTACTGGTTACAGAAGCACCTAAAGACCTTGGCTAACCTGATACCTGTTCTTTCtggtcggtgtgtgtgtatgcgtgtctgtATTCATGTGTGCGAGTAAGAGAGACCAGTAGTTGGTAATACCAGTCATGTGGAAACTCAACATTGGGAAAGAAAGCACATCAACAGTCCCAAATGTTCTTAATTTTAACATACCCCACTTCTGGCAAGCTACTTCAAACCGCCTCTTTCATTGGCTAAGCACACAACAGTACTCCTCTTTCATTGGTTAAGCACACAACGGTGGTCCTCTCTAATTGGCTAAGTACACAGTTCCTCTCTCATTTACTAAGCACACAACAACTGTACCCCAACAGAAGTAGGTCTATAGgtcaggaagacagagtgaagcACACAGAGTTGGGAAGGCCAGAACGAGTCGGTTACAACACATACAGATGGGATCAGGCTACATCCATACAGCACACTCAGTCTCAgcctaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaaagagagatatagagaccatCTGTCTCTGATTGGAGTAGCAGATGCAGGGGAGTCTGGGTAATCCCTGAGTTGGGTAACAGACAGATGAGAACACCCAGAGATTCAGATGAGATTAGAACCTTTCCATCAGGCTgcgacacacacaaccacacacacacacacacatacacacacaaccacacacacgacacacacgcacagtcatTGATGTGAAAGGAGTGGATGGGTCCCAGTCTTTCCGctcctcctcagagagagagagtgtatcaGTTAAACATGTTGATGTTGTTGCTGTGGATAAGCTCTTCGGTCTGGGCCAGAAACAACCCTTAGCTCCAGATGAGCCAGCTGTATCCCTGAACCCAAAAGGccagtctgtttgtctgtttctactgtctgtctgtggagCTAATGCACAAGTACTCCATGTTGGAGATAGAGCACTTCCACATGACCCAGACACCACACAGTGTCCATCTTGCTATTCCTGCTCCCCAGTTCCCATGAATTAGTGTGTTCAGGTGGACTGTGTTTCTGGTTTGCCTGGACTGTCTGGTGTGAGTACTGTACCACTGACAAGACTTTACAGACTTTACAAGGGGGTTGTTACGCATGGAATCTCATGCTGTCTAACTATGAGAGACGTTTTACATTACTATAACAGAAAATAagagatataaatatatatattgtgcaGATTATTTATATTTCGGGGGTGCAAGTCGCCCTGCACTCGAGACCAGCGTTCTACCATGTGATCATTAAACATTCTCTCGTATTGATGACCTCGTGGTTTGGTTGGTTTTTCATGTCAAGTGCATTTTCCCAATAAATGCCTTTGTTTTAAACCAA

Function

GO: NA

KEGG:

id description
K12171 SH3RF, POSH; E3 ubiquitin-protein ligase SH3RF

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057574 lncRNA upstream 4471 29999911 ~ 30000210 (+) True G1797957
TU2057322 lncRNA upstream 93369 29910809 ~ 29911312 (+) True G1797733
TU2057275 lncRNA upstream 152778 29851540 ~ 29851903 (+) True G1797693
TU2057267 lncRNA upstream 159977 29844077 ~ 29844704 (+) True G1797687
TU2057261 lncRNA upstream 167305 29837114 ~ 29837376 (+) True G1797681
TU2057657 lncRNA downstream 39981 30122490 ~ 30122745 (+) True G1798036
TU2057659 lncRNA downstream 43619 30126128 ~ 30126849 (+) True G1798038
TU2057670 lncRNA downstream 55163 30137672 ~ 30137948 (+) True G1798048
TU2057672 lncRNA downstream 58257 30140766 ~ 30141329 (+) True G1798050
TU2057623 lncRNA downstream 65372 30147881 ~ 30150071 (+) True G1798003
XR_005038966.1 mRNA upstream 71646 29917773 ~ 29933035 (+) False LOC118943632
XR_005038967.1 mRNA upstream 71646 29917784 ~ 29933035 (+) False LOC118943632
XM_021579460.2 mRNA upstream 88873 29912281 ~ 29915808 (+) True LOC110501716
XR_005038816.1 mRNA upstream 101008 29894126 ~ 29903673 (+) True LOC118943587
XM_021579458.2 mRNA upstream 132580 29858755 ~ 29872101 (+) True LOC110501715
XM_036959072.1 mRNA downstream 20369 30102878 ~ 30118340 (+) True akap17a
XM_021579969.2 mRNA downstream 38349 30120858 ~ 30125521 (+) True LOC110502086
XM_021579469.2 mRNA downstream 96210 30178719 ~ 30203292 (+) False LOC110501723
XM_021579470.2 mRNA downstream 96210 30178719 ~ 30203292 (+) True LOC110501723
XM_021579471.2 mRNA downstream 131155 30213664 ~ 30217941 (+) False arsh
TU2057325 other upstream 79299 29923557 ~ 29925382 (+) True LOC118943632
TU2057150 other upstream 259827 29744192 ~ 29744854 (+) True G1797582
TU2055989 other upstream 994408 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 994408 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 994408 29008624 ~ 29010273 (+) True LOC110501700
TU2057803 other downstream 418147 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 806152 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 806152 30888661 ~ 30891067 (+) False G1798397
TU2058048 other downstream 806152 30888661 ~ 30891067 (+) False G1798397
TU2058049 other downstream 806152 30888661 ~ 30891067 (+) True G1798397

Expression Profile