RNA id: XM_036959592.1


Basic Information

Item Value
RNA id XM_036959592.1
length 2077
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110502146
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 39429672 ~ 39436466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTgagcagagagaggaacagaacaggcAGTTACAGTAACATGAGGAAGAACAGAGGCTCTATGAGTGTGAGGTTGTTGTGGATCCTGGTGTGGATATCAGCATACGGTCAAGGATTCTCAGCTGAAGTATTGTCAAAGAACATATTTTTCCTTGCCGGGTCCAGAGGAAGAGTCACTGTCCCAGTTTCCCCCGTGGGTCCACAAGGGACAGAGCACCGATTCCAATGGATATGGACCTCACATGACGGCAGACACTCAAACACCACAATAGCCAATATAATTTCATCCACTTGGGAATCTGTATCGAACACATTGGGTTTTTCAAAAGGCAGTGGATATGGTCTTTCCATGGGGACAAACTTTGAAAATGCTGGAGAGTTTGTGTTCATGCAAACCAAACCAGTTTCAGTTATTGTGACGAGGTTTCAGGTGTTTGCTTTCAAAGTTACACCCTTTGAATGGCCTTCATTTCGTCTGGGTTCTGATGTGAGTTTTAGTTGTGAGCTGTCCAGCCTACCAGAAGGGACCACACTTCAGTGGGAAAGAGAAGGAGATCCCACTTCTAACACCACGTTGTTTTACAACAACACTGTCCACATGGTCATCCATAGTGTTGATCAGAGCAGTAATGGGAGATGCAACTGCGCTCTCAAACAGAATGGAACATTGTTGTATGAAATTTATAATACCTTGAATGTTGAGACAAGCACATTCAACATGCCAGTAACTTTGTTCAGAGAGAGCAGCAACAGCAGTGAGGTGGAGATGATGTGCAGGTCTTCATTCTCGTACAGAAAAGCCTCCTGGACCAAGGGCTCATCTCCAGCGGAAGCACCTGCGACTCTGACATCAGATGATAGACTAGAAATTGACCGGTTCTCATCTCCCACTTTCAAACAAAAAGATTTTCCCCTGAGACTTTCACCAGTGGAATTTGAGGATGGAGGAGTGTTCAGATGTAATTTTAATAACAAACTCATGTCTTATGTTCAACTCACAACCATTCAAGTCTCTGCATCTAGAGGCCCCCCTGGTGGCCAGTCGGTGGTGCTGAAGTGTGAAGTGTCGGAGGTGAACGGTGACCCTGTGACCCTGGCCTGGCTGAGGATGGAGGGGAGGACGGGGCTAGTGGTCAAAAAGGACATCCTTACAGAGAGTCAACCCAACTGGACACTCAGTGTGACCCTGCCCAGCCTCCAAAGGGACCAGCTGGACTGGCAGTGTGCGGTGTTCAGAGAGGACATGCTCAGAGCGAGTGTTCCCCTCAGACTCCGTGGTGCTGGTGGAAGATCTGGGATACCAGGCCTAGTGTTACCATCGCCTCTGAAAGACGACACCTTGCAGATTTCGATCATTGTGGCCTGTACAGCGTTGGTTGTTGCCGGGATACTGATTGGTGCTCTGGTGTTCCACCTGAAGAGGAAGAAGACAGACCCAGCTGTGACATCCCTACCACTTACCCAGAAGAATGACCCAGTCTATGGTAACATCACTGATCCACTAGCACACCAAGAGCTCCAGGGGGGGCAAGATGGCAATGAGGAAGTTCATTACTCCGAACTTGCTTTGGGTGAACCCAGGCTTGGTGATCCCAACAGAGTCACATCAGGGTCAAATCACGTACAGGAAAGGGGTGCTGTGATCTATTCGACGCTCAACATATAAAAACACCTGTCTTTCAGCAGGATAAAACTCCTGTGTTAAAATGCAGGGATTCTTTCTGTTTATTTCTTAGTTTGTTCATTAGACTATTGTGTAGTTTTGTACCTGAGTTTGTCACAATGTAAAGGAAGGCTGTGCTTATTTCCATCCTGCTCACatgcccacagctggcagcacaCAAGTCATTATCAAATCGGAAAGCAGCTGCACAAGACTAATCGTAATGCCCGTAGTAAACTTTGTTTCACTTATGAAGGAACATCGATGAATTACACAATGTTCAGGGGACAATATGTTAAAATTCAAATAGCTTCAAATGTAAATGACTTAAAAACCTCAAAccaactataaattgtagaagttcatacatacagttgaagtcggacgtttacatacacttaggttggagtcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2069177 lncRNA downstream 56299 39373168 ~ 39373373 (-) True G1808510
TU2069147 lncRNA downstream 83630 39345841 ~ 39346042 (-) True G1808482
TU2069112 lncRNA downstream 119183 39310257 ~ 39310489 (-) True G1808451
TU2069031 lncRNA downstream 199816 39166420 ~ 39229856 (-) True G1808385
TU2069005 lncRNA downstream 306118 39108339 ~ 39123554 (-) True G1808367
TU2069304 lncRNA upstream 15100 39451566 ~ 39452483 (-) True G1808627
TU2069305 lncRNA upstream 18055 39454521 ~ 39455134 (-) True G1808628
TU2069624 lncRNA upstream 138014 39574480 ~ 39575918 (-) True G1808911
TU2069689 lncRNA upstream 264742 39701208 ~ 39702525 (-) True G1808969
TU2069724 lncRNA upstream 316523 39752989 ~ 39753230 (-) True G1809004
XM_021579706.2 mRNA downstream 274902 38998682 ~ 39154770 (-) True klf7b
XR_005038835.1 mRNA downstream 449646 38978507 ~ 38980026 (-) False LOC118943609
XM_021579702.2 mRNA downstream 499931 38899484 ~ 38929741 (-) False LOC110501854
XM_036959076.1 mRNA upstream 733 39437199 ~ 39441516 (-) True LOC118943588
XM_021579710.2 mRNA upstream 153563 39590029 ~ 39680169 (-) True ramp1
XM_036959294.1 mRNA upstream 246754 39683220 ~ 39731113 (-) False LOC110501861
XM_036959297.1 mRNA upstream 246754 39683220 ~ 39731113 (-) False LOC110501861
XM_036959295.1 mRNA upstream 246754 39683220 ~ 39731114 (-) False LOC110501861
TU2068897 other downstream 485142 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 485142 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 817385 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 1216485 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 1234576 38193422 ~ 38195096 (-) True G1807750
TU2070925 other upstream 1300182 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 2011433 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 2168508 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 2950356 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 3168237 42604703 ~ 42605020 (-) True LOC110502155

Expression Profile