G1808628


Basic Information

Item Value
gene id G1808628
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 39454521 ~ 39455134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2069305
TTTCTCATGTTCACCATGAAtcaattttatttcacctttatttaaccaggaaggccagttgagaacaagttcttgtTTACAACTGCAACCAGATAAAGCAGAGCAGTGTGACAAAATCAAACAACACAGTTGagaagcgtacagtcaataacacaatcaaGACAGATAAGTAGTAGCACATCTTAGAGTGTCCAGTGTCAAAGGGAACACAGTGTAGTCTCAGTCAGCGATCGGTAGCTAGTCCTCTGACTTGCAGGCTAGCAGGAAGAAATACCTTACTCCAACCACAAGCTCAGTCTCTGGGGAGGTCACCCCCATCACAGCCAACAGtTGTGGGTGATGTCAGTTGACAGTCTGCTGGCTTCCTCTGGGTCTTTCTTTAGTAGAGCCTGGTAGCTGGAAAATGACTCTATCATACCCATGTAGTTGGACAGAGTCATGGACTTCTTCACCCACATACACTCCTGCCTAACAACACAGCATTAACATTACCTTAGAGT

Function

NR:

description
putative methyltransferase DDB_G0268948

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2069305 True 500 lncRNA 0.44 2 39454521 39455134

Neighbor

gene id symbol gene type direction distance location
LOC118943588 NA coding downstream 13005 39437199 ~ 39441516 (-)
LOC110502146 LOC106582388 coding downstream 18055 39429672 ~ 39436466 (-)
klf7b klf7 coding downstream 299751 38998682 ~ 39154770 (-)
LOC118943609 NA coding downstream 474495 38975839 ~ 38989602 (-)
LOC118943608 NA coding downstream 540976 38911464 ~ 38913545 (-)
ramp1 LOC106582391 coding upstream 134895 39590029 ~ 39680169 (-)
LOC110501861 LOC106582392 coding upstream 228086 39683220 ~ 39731114 (-)
LOC110502147 LOC106582393 coding upstream 281295 39736429 ~ 39847997 (-)
tmem177 tm177 coding upstream 395721 39850855 ~ 39853369 (-)
LOC110501865 LOC106582395 coding upstream 505297 39960431 ~ 40027153 (-)
G1808627 NA non-coding downstream 2038 39451566 ~ 39452483 (-)
G1808510 NA non-coding downstream 81148 39373168 ~ 39373373 (-)
G1808482 NA non-coding downstream 108479 39345841 ~ 39346042 (-)
G1808451 NA non-coding downstream 144032 39310257 ~ 39310489 (-)
G1808385 NA non-coding downstream 224665 39166420 ~ 39229856 (-)
G1808911 NA non-coding upstream 119346 39574480 ~ 39575918 (-)
G1808969 NA non-coding upstream 246074 39701208 ~ 39702525 (-)
G1809004 NA non-coding upstream 297855 39752989 ~ 39753230 (-)
G1809012 NA non-coding upstream 315313 39770447 ~ 39770812 (-)
G1809034 NA non-coding upstream 354187 39809321 ~ 39810000 (-)
G1808299 NA other downstream 509991 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 842234 38520872 ~ 38726596 (-)
G1807731 NA other downstream 1241334 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 1259425 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 1694273 37759971 ~ 37760248 (-)
LOC110501878 LOC106582406 other upstream 1281514 40736648 ~ 40813437 (-)
LOC110501886 rhg15 other upstream 1992765 41447899 ~ 41523764 (-)
G1811042 NA other upstream 2149840 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 2931688 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 3149569 42603998 ~ 42605768 (-)

Expression


Co-expression Network