RNA id: XM_021579726.2


Basic Information

Item Value
RNA id XM_021579726.2
length 1755
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110501875
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40675303 ~ 40684544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGAAATTGGAGTGAATCCTCAAAGTCCTGCAAACTCCAAGCTGAGGACCGTTGAGTCTTATAAAGGGTCTGGAGCTCTCGGATACAGGACTGGCTATATGGGACGCTACTTGGATGTCACAGTCTTTCACTCTCCTAAGGGATCATATTAATTATTTAAAGGTTttctatttttacattttttaagttACTTTCCCGTCGCGACGTTCTCATTATGTGCAGCTGGCTGCTGCAGTCAGCCCATCATCATACTTGGGAATCTAGAACGTTCGGATGTTCTGTTGATCCCGACTTTATTCTTCTTTAGGACACTTTCTATTTTATGGAAAGACGGAGGACAATATCACAATTGGTTACAAAATGGATTTAAATCCAAGCGTCAAATGTAAAATAGTTGTCGTTGGGGATAGTGAATGTGGGAAAACCGCTCTACTAAATGTGTTTGCAAAAGATTCATTTCCTGAGgGCTACATTCCCACGGTGTTTGAGAACTACACGGCAAGTTTTGAAATCGATACGCAGAGAGTTGAACTCCGTCTGTGGGACACTTCAGGCTCTGCATACTATGACAACGTGCGACCTCTCTCCTACCCGGACTCTGATGCAGTCCTCATCTGCTTTGACATCAGCAGACCAGAGACCCTGGACAGTGTACTGAAGAAGTGGAAAGGAGAGATTGAGGAATTCTGTCCCAACACCAAGATGCTGCTGGTGGGGTGCAAGTCAGACCTACGCACCGACCTTTTTACCAAATCTCACTCTGGCCATACCCCAGTGTCCTATGATCAGggCTCTAACATGGCCAAGCATATCAGTGCTCCGTACATCGAGTGTTCGTCTCTGCAGTCTGAGAACAGCGTCAGGGACCTCTTCCACGTGGCCACGCTGGCCTGCGTCAACAAGGGCAACAAGAACGTCAAACGCAACAAGTCCTCCAGGAGCACCAAGAGGATCTCACACAGCAGACCGGACCTGCCCACCGTGGTGTCAGACTTCCAGAAGACTAAAACTAAGACCTGTTCTGTTATGTGACTGGGATGATGTCAttagagagactgggagacactGTGAACATGCTAATGAGCATTTGAATTTTGGACAACCATGAAGAGCTTTATGCACTATTAGTGTGCCAACTGAATGAGGGATGGTGTTGATGGTGAAAACAGCTACGTTATACCCTGCTTTTTGACACGCTAGGGGAAGCATTAAAAACAAGGCGTAAATGAACACATCATGAACTAGATGTATCCCAGACAGTCGTCACTAAAGAGCTCTACTTTTATTCTCAGCTTGAACTTGAATCCTATGGTTTAGAACACAGGCAGGGTTGAAGAATCCTGACTATTGAAAAGCTTCCATTTCTGAAGTGTTACAGGTACCAGTGTTTTGGGGTCTGCTGTTTTCAAGGATCCTGTGTGTTCTTCTAACTAATGAACCGAAATTGTTGTGAGGAGAGACAATGAAGGATATGAGAGCAGTTAGATTGTGTAATGTACAGAGAAGCAATGATGACAACCAAGATGTCTGAGCAGAATTGATGCATGTCACGTGTTGTCACCATTTACATTTCCTTTTTTCTTAAAATGTTGCCCTTTTCTGAATCTGTTCATTACAATGTCAAAATAGTTCATTTCAGAACTGTCAATTTGCCATGtttaaatgtactgtagtcatgtAAATGTGGTACATGTTTGAATTTATACCTATACACGTATAAGCCCATCATTAAATGCCTCAGTGCTGCATTTATT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2070760 lncRNA downstream 13472 40661625 ~ 40661831 (-) True G1809949
TU2070733 lncRNA downstream 38923 40636177 ~ 40636380 (-) True G1809922
TU2070659 lncRNA downstream 104936 40569839 ~ 40570367 (-) True G1809848
TU2070611 lncRNA downstream 138996 40536104 ~ 40536307 (-) True G1809802
TU2070610 lncRNA downstream 140043 40535023 ~ 40535260 (-) True G1809801
TU2070913 lncRNA upstream 39252 40723796 ~ 40724237 (-) True G1810091
TU2070932 lncRNA upstream 72564 40757108 ~ 40758215 (-) True G1810110
TU2071175 lncRNA upstream 151205 40835749 ~ 40835983 (-) False LOC110501879
TU2071181 lncRNA upstream 157260 40841804 ~ 40842020 (-) True G1810331
TU2071182 lncRNA upstream 158284 40842828 ~ 40844532 (-) True G1810332
XM_036959321.1 mRNA downstream 180529 40451597 ~ 40494774 (-) True LOC110501872
XR_005038968.1 mRNA downstream 390461 40283405 ~ 40284842 (-) True LOC118943637
XM_036959305.1 mRNA downstream 505162 40084457 ~ 40170141 (-) True LOC110501866
XM_036959304.1 mRNA downstream 505164 40084457 ~ 40170139 (-) False LOC110501866
XM_036959077.1 mRNA downstream 648150 39960431 ~ 40027153 (-) True LOC110501865
XM_036959327.1 mRNA upstream 90664 40775208 ~ 40813437 (-) False LOC110501878
XM_036959331.1 mRNA upstream 150632 40835176 ~ 40845419 (-) False LOC110501879
XM_036959329.1 mRNA upstream 150632 40835176 ~ 40858542 (-) False LOC110501879
XM_036959328.1 mRNA upstream 150632 40835176 ~ 40882242 (-) False LOC110501879
XM_036959330.1 mRNA upstream 150632 40835176 ~ 40882242 (-) False LOC110501879
TU2068897 other downstream 1730773 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 1730773 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 2063016 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 2462116 38208790 ~ 38213187 (-) False G1807731
TU2068246 other downstream 2480207 38193422 ~ 38195096 (-) True G1807750
TU2070925 other upstream 52104 40736648 ~ 40813387 (-) True LOC110501878
TU2071828 other upstream 763355 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 920430 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 1702278 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 1920159 42604703 ~ 42605020 (-) True LOC110502155

Expression Profile