RNA id: XM_036959335.1


Basic Information

Item Value
RNA id XM_036959335.1
length 3701
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110501881
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40930259 ~ 40941980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTTTACGCAACGTCTTGTGCGTATGTTATGTCTATGCTGTGGGTCCTTCATTTCACGCTCGTTGCGTAGTAACGCCAATATATACTCTCATAGCGTAAACAACGAGGCTTCTGTATGATTGGTGACGCTTTCTTCGACTAGTGACGTGAATGATTTTACGTAAAATTTCTTGGTTGCTATTGATAACAAACAGGCGTGCGTTGTCGTAACAAGTTAGCtgggctaacattagctagctaatttacagaGCATCATCTCCAGAGGGCCATCTCTGCTCAGTCGGTTTTCAGGGAGAAAAAGGAGAACATGGTCATCCCGGTGCCTGAGGCAGAGAGCAACATCACTTACTACGACCGCCTCTACAAAGGAGAGCTCAGGATCCCCAAACAGCTCTTCCACATCCAGCccctgggtctggacaatGAGCAGCCAGACTATGACATGGACTCAGAGGATGAGACTCTCCTCAACAGACTCAACCGCAAGATGGAAATCAAACCCATACAGTTTGAGACCATGGTGGACAGGTTGGAGAAAGCCAGCACAAATCAGATGGTCACTATCACAGAGGCCAAACTGCTGCTGAACGAGGATGACTACCTCCTGAAGGCAGTGTACGACTACtgggtgaggaagaggaagaactGCCGGGGCCCGTCGCTCATCCCCCTCATCAAGTTGGAGAAGAGGGACGGCTCCACCAACAACGACGCCTACGTGGCATTCAGACGACGCACAGAGAAGATGCAGACCAGGAAGAACCGTAAGAATGACGAGGCGTCCTATGAGAAGACGTTGAAGCTGAGGAGGGAGTTCAGCCGCACGGTCACCATCCTGGAGATGATCAAGCGGAGGGAGAAAAGCAAGAGAGAGCTGCTGCACCTCACCCTGGAGGTGGTGGAGAAAAGATATCAGATGGGTGACTTTACGGGTGAAGTCCTCAGTGAGGTGACAGCCCCTCTGGCTGAGAAGCCCGTCTACACAGTTCCAATCACTGTAACCAACGGAAACCGCCATAACCACAAAGCTGAGATCAAAATCAAGACGCACAAGTCAGGTGGTCTCCCCTACCACGGGTACCACCATGTCTCGGTGAAGGACGAGGATCCCTTTGACTTTGTCAGACCAAAGAAAAAGTACACCAGGCGGGAACCTCTGTGCCGCCCAGGCAGGCCTGCCAAGCGCCAGCACATCGTTAACAAGGCCGATATTAAACAGTATGACTTCCACAGCTCTGGAGAGGaggactacccactgTCTCCATCATCAGAACCGGACGAGGAGAATGATCCAGATGGAACGTTTGCCTTCAGAAGGAAAGCAGGATGCCATTACCTTGCTGTGAGTCTCACTGCAATCACAACTCCCTGTTTGGACCAGACCTCTGGGCTCCTGTGGGATCACCCTGAGTTGGCAGGGCTGGATGCTCTGCGGCATCGTCAGTCCCTCACCGCCCTCTCTGTTCCCCAACGTTGTGTGGGACTGGCCCGTAGGAGAGTGGGCCGAGGTGGCAGggTCCTGTTGGATCGGGCATCGTCAGACCTGGATGGAGTACTGAAGCAGCTAGACTCAGGTGTCTTCAGCTCCTCCTTCCCCAAGGACCTTTCTGACCACCAGGTACCCACACAGAACCATCGAACTATGCCTGGCTCTGCATCCTCGCTGACAGACCTTCTGAGCAACATTCAAGCCCTGAGGTGGCGCTTTTTCAGACCTAGGTCTACCCAGGGTGACGCCAGTGGGGAAGGCAGGACGGGTAGACCTTCCATGGACAACAGGTTGTCTGGAGGGCTGTTTGTCCACACCAAGAACAGTGGCTCAGGTGGCATCACAGAGGAACAATACCAGGTCCATCAGCAGGCTCTGGCCCAGATGCAGAAACAGCAGCTGGCTCAACTGCAGCTGAAAGCTCCTCCTCCCCAGCAGCATTTCTCATTGCCCGAGCGACAAAACACACGGACTGCTGGCTCCACTGACTGCATCATATCAAAGACTCTTGACTCGGTCGGCGCCCATTTTGCTGCATCAGCTGTGATTAGTGCTCCAGGCCAGGTCAACAATGAGAACAAACCAGACAACACCAGCGTCAACGGGGTCGTCCAGCCTTTAGGGACCTCCAGACCTCCTCACTCTACCAGCACATCCCAGGGCGGCACGGGGTTGGACAGGTCAGGTCGGACCCCCTCCAGCGGTGGCCCTCTGCTCCCTGCTTCCCACTCGACCACACCCCAGTCTCTGCCCAATCACCGGGGCCACGGCAGCGCTGTCTCCCctgcccaccaccaccacaatgcCCGGCCCTCACCGTCTTCCTTGAAGCTGGCCACCATGGCCACAAGCAGCCTGGACCGCGTGCCCAAGGTGACGCCTGCCatcagcagcatggccagGGATAATCACGAACCGGAGAGACTTGCGCTGAACGGTATTTCAGAGACCACAGTACCAATGGAGGTGACATAACCtcgtcccttcctcctcccctcagaccgGTGAATGTGACAAACTAACTCGCCTCCGCTAGAAAGAATGCAAGCCCCAGCCACCAGAGGGCAAGCATATACAAGGACCTATACAGAATCGAGCATATCAAAATATTATATCAAATTTGTCTAttataaatgtacattttgtaaaTTGGGAATATCACTAACTTGTAAAATAGTATGTTTGTATCATTGGTATGTTTCTTTttttctgttacttgaattctagCGAATTTGTCATCATGCTTTTGCACTtaaaaatgcaaaaacaaaaacgttgtacatgtaaaaaaaaaaaagcaaaaaaaaagacTTGTTTGTTGTTGGGATCATGAGCATGAACCACGGATCCCGTATCACTCGTTTTCACTATTTATTTTGCaatgtttacatttttgtatCTCTAAAGAGGAAATGAATCCGCAAAATGTGGACATTGGTGTTGCTAGCGTATTTTATTCTTGTGCTTTTTTTTCTTCTGAAGATGGAAAAATTatccagattttttttatttggttTCACAAATTGAATAGATATGGTCTTTTTGTAAGTAACGTTAGATTAGTAATGGTATTTTCCCCATCAGACAATTTATTTTCTGTTACTTTGTCAGTTGTAACAGGAATTTGTCTTTTtaattctgttttttattttttcattcaaTGCAGAATTTTCCAAAAACAGTGAAGAAATCTTAAATGTGCCATTCGCCATACAAACCTATTTATTTGAAATGACAAATGCATCCTAAGATCTATCTGCAAATGTAAAGCAGGAaaaccatttttaaaaaataatatatttgtCCTTTTACACAGGTAGGGAGCCAATGAAGAGTACATAGGAATCTTACCATTCTATCTGTAATGTATTACGTGGTGTAATCTTGAAGATTACTTGGCAACTCTGttgaatgactaaccctttgGATTGGGGGGTGCAGATCAATatttttgggattttttttttctcccttggTGAAGGGGCAAGAAACATGTTGAAACGATGTCTGATGGTCGGTGCTTGACCTCTCCTGTAGATTAGTGTAGTTGATGTAGTGATTCCTGTACAGATATTAGAAATATGTTTAGATAATTATCTAGTGTTCATGCACTATTTCTTCAGACATACCTGTTTCCCTGTTACTTGTTCTTGGAGGGTTTCAGAAAAAAGTGCTGGGAAATAAACATATCTATTCATATCAGTATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071179 lncRNA downstream 1023 40888770 ~ 40929236 (-) True LOC110502149
TU2071211 lncRNA downstream 41600 40888345 ~ 40888659 (-) True G1810361
TU2071201 lncRNA downstream 62712 40867332 ~ 40867547 (-) True G1810351
TU2071200 lncRNA downstream 63034 40867020 ~ 40867225 (-) True G1810350
TU2071187 lncRNA downstream 80256 40849804 ~ 40850003 (-) True G1810337
TU2071240 lncRNA upstream 938 40942407 ~ 40947927 (-) True LOC110501882
TU2071235 lncRNA upstream 51450 40992919 ~ 40995869 (-) True LOC110501883
TU2071259 lncRNA upstream 59841 41001310 ~ 41014470 (-) True G1810401
TU2071267 lncRNA upstream 67291 41008760 ~ 41009125 (-) True G1810408
TU2071345 lncRNA upstream 182093 41123562 ~ 41123869 (-) True G1810480
LOC110502149 mRNA downstream 1022 40883596 ~ 40929237 (-) False LOC110502149
XM_036959328.1 mRNA downstream 48017 40835176 ~ 40882242 (-) False LOC110501879
XM_036959330.1 mRNA downstream 48017 40835176 ~ 40882242 (-) False LOC110501879
XM_036959329.1 mRNA downstream 71717 40835176 ~ 40858542 (-) False LOC110501879
XM_036959331.1 mRNA downstream 84840 40835176 ~ 40845419 (-) False LOC110501879
XM_021579734.2 mRNA upstream 935 40942404 ~ 40988209 (-) False LOC110501882
XR_002470266.2 mRNA upstream 935 40942404 ~ 40988210 (-) False LOC110501882
XR_002470265.2 mRNA upstream 935 40942404 ~ 40988211 (-) False LOC110501882
XR_002470267.2 mRNA upstream 3916 40945385 ~ 40988211 (-) False LOC110501882
XM_021579736.2 mRNA upstream 51446 40992915 ~ 41051487 (-) False LOC110501883
TU2070925 other downstream 116872 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 1985729 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 1985729 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 2317972 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 2717072 38208790 ~ 38213187 (-) False G1807731
TU2071828 other upstream 506430 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 663505 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 1445353 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 1663234 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 1735788 42677257 ~ 42677760 (-) True G1812404

Expression Profile