RNA id: TU2071235


Basic Information

Item Value
RNA id TU2071235
length 2930
lncRNA type sense_over
GC content 0.38
exon number 2
gene id LOC110501883
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40992915 ~ 41051487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAGACCCCTCactgaacaaatatttttttgtccAGCACCTTGACAATGGACAAAGTCATTTTAAAGTTGACCTTTTGGTTGATATTACCATTTTTTTGTAAAATGAAAGGAAAATGTACTTCCTGGACTGACTTCAGTTTTTTTTTCTAAGAAAAGGTggaacaggagagaagaagaatcGAGACACACAGTTAACTTCATtcagtatataaaaaaaaaagggcAACTTGGTTTTTAAACACATTTGCTGTTTGTGTTTCTCCGAATGACTACTGTAATGCCAATAAGAAACAGCTTCTGAATGTCTGTGTTTCGCtgctgtacagagagagagagagagagagagagagaacggcgTAATCAAGGTTATTTATCCGGACCTGCCTCACAGCATTTCTATACAAATAACCATCAACCTCTTGAGTCTCTCAACAAGGTATACCTCAGTTGTACATCCTACAAATAAGTATGTTTTCCTTTTGTAACACTAAAACCACTACAGGACATTGACATTCAGATGACATGTTTGGTATTGAACCTTTTTCAAATAATGGAGTATGCCAACAAAATGGCCATTCACAAACAAGTGTTTCTGCCTTCTTCATTTCTGTTTGTGTATTTTCTATTTTATGTTGCCCCTGCTATTCAAATGTGACTGTGAGCATTGTTGTTTTTACCAAAATGTTTAGAACTTTTTAAACATCCctgaaaatatgaaaatatttgaggaaaaatattttaaagCACTTCCCTTTTTAGGTTTGCGGTGTCCACATAATATTAAAAACGCATGCCTTTTTTTGGTTCGTTTTCGAGACTCTGTGTAAAAGTGTGACGCTAATGTCGGTTGTTTGAAACCCCGGTTTGATTTTAAACTAAAATGTCTACAATCCACTGTAACTGTATTGCTCATTCTCCCTGCCATGTTTGTGGTGTTTTCTGTTCGTAGTTTACTATTGTCAGCGTATTTCAATACGTCTCAGGAAGCAATACGTTACTCtacgaaccccccccccccctctctctctgcgttTAGGCTCTGACTCATTCTCGTGCCATTATTTTGGATAACCTAGTCGAGGGGTGCGTACACGAGGTCGTTACGGCTTCTGTGGTTTTCAGGTAGATGTCCATTTAGACAGGTTATCCAGAACATGTCAGGTGTTCTACATTGCTAATGTAGCCATCATGATAAAAAATCGATATGTGTTCACCCTCAGTCTTGTATTCTCCATCACTAACAGCATGTCCACCACTTTGGCTATGTGCTACTGTAGACAACCCATAACAGATTCAAATGGCCAATTGTAGCTTTCAGATTCTAACCAGAAATATTGATCTATTAGTAGTCCTATTGTAGTTAAACACTGGTGACTCAATTGTGTGCTTCTCTCCACCAGACAGATGTCGTTATATCCTACCACATGAAGAGAGACGTTCAGGGACATAATAACACCATGCTGTTACTGTTTTCACTGGATACAATCAAAGTTGGAATTGACCGTTGCTTTTTGCCATGGCACCAAGTTTCTTTCCCTCTGTGTAGCTTTTGTTTTTAAAATCAATGTAATCGTCTGTTTGTGTTTATTCTCTTGACTTAAAACCAGTACATCCTCTCTGGCAAGAACTGTATGCCAACTCAATAGTGCAACAACATGTAAGTTATCATGTAAGTTCTGGATTTAAAGGGGTCACGGCCTCTGTAGGACTAACACCGTGTAGCTCAGGGTTTCTTAttctctgactgactgacatctATGCTACTCTTGCTATTCCTCTCTAACCAGAGCCACTCTGATTCAGGAGTGTAGACACGGGGAGCCAACAGAAGAGCAATCTTCAAAAACAGGGGGAGGCAGATTTGCAACCGCTGCCATTTTGACATGTACAAGAGGAAAGTCAAATCCAATCTGTTTGCATCCATATTTTGTTCCACAATATCTTTTTAGGAACACTACTGCTGTGCAGATACTCTATCTCCCTAAACAGATACTTCCCTCTGGCCTCAGAAGGTTTCTAGGATTCTTTCATGTCAAACAAGCTACTTCTATGACACAGTCATGTTCTTAAGGAGGCACACAGTGCATGTCGCCTACATTGTAGTATATCCCTTAACATAAGCCAAACCCCTCTATGACAGCAGATGACTGGGATGGAAAATgcacagtatgtacatatgaatgTTGTTTTAGATAGTGATTTTAGCATGAGGTTGTTTTTATGGTCTCAAAGTGAAAAACGAAAACAATCCTTTATCATGTTAATAATATTCCAAaaaataatttaatgttcattttatatgtaattgtattgtaaaaaaaaaaaaaaaatggttttattaatttatgtcAAGGCCCAGACAATGCTCACTTCTCTTTCAAAGGAAAATGTCCTATAATGGAGTATGCCAACAAAATGGCCATTCACAAACAAGTGTTTCTGCCTTCTTCATTTCTGAAAACGTATTGTTAATATATAGGCTAGCAAAGACTCCCTGGATTGGCTCATTCATTACCTCAGACCAATCAGACAGACGTCCTAGCTGTCAACTCAACCTTCCCACAACATTGATCAGTGTTGGCAGATTGTATGGTGTGACCATAGACCTGTGTAGTTAACAGTGCTGTGGGGATATGAGATTTGACAAGCTACAGAGTTTTTCTTTTAACATTTTCTATGTTATGGTGACGCATTATTTTTCGTCATCACAACAGAATTGGTGTCACTGTAACTGAGGTTTGTGTTACCTGCCGATATTCTCACCGTGGTCATAAATGGTCATCCTGCTATCGAAATAAACATGACataatttcctttgttttgtatttaacaAAACCGTTTCAGGGCTTGGTTGGAAGTGATAGTTAAATATTGTACAGAAGACATTTTATGCCATTTCTCCCCCTAAAATAAAGTACAGTGACTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071240 lncRNA downstream 44992 40942407 ~ 40947927 (-) True LOC110501882
TU2071179 lncRNA downstream 63683 40888770 ~ 40929236 (-) True LOC110502149
TU2071211 lncRNA downstream 104260 40888345 ~ 40888659 (-) True G1810361
TU2071201 lncRNA downstream 125372 40867332 ~ 40867547 (-) True G1810351
TU2071200 lncRNA downstream 125694 40867020 ~ 40867225 (-) True G1810350
TU2071259 lncRNA upstream 5441 41001310 ~ 41014470 (-) True G1810401
TU2071267 lncRNA upstream 12891 41008760 ~ 41009125 (-) True G1810408
TU2071345 lncRNA upstream 127693 41123562 ~ 41123869 (-) True G1810480
TU2071356 lncRNA upstream 137233 41133102 ~ 41133392 (-) True G1810491
TU2071368 lncRNA upstream 144819 41140688 ~ 41141172 (-) True G1810503
XR_002470265.2 mRNA downstream 4708 40942404 ~ 40988211 (-) False LOC110501882
XR_002470267.2 mRNA downstream 4708 40945385 ~ 40988211 (-) False LOC110501882
XR_002470266.2 mRNA downstream 4709 40942404 ~ 40988210 (-) False LOC110501882
XM_021579734.2 mRNA downstream 4710 40942404 ~ 40988209 (-) False LOC110501882
XM_036959333.1 mRNA downstream 50939 40930259 ~ 40941980 (-) True LOC110501881
XR_005038969.1 mRNA upstream 444079 41439948 ~ 41447272 (-) True LOC118943638
XM_021579740.2 mRNA upstream 452030 41447899 ~ 41522899 (-) False LOC110501886
XM_021579738.2 mRNA upstream 452030 41447899 ~ 41523764 (-) False LOC110501886
XM_021579739.2 mRNA upstream 452030 41447899 ~ 41523764 (-) False LOC110501886
LOC110502151 mRNA upstream 616693 41612562 ~ 41613136 (-) True LOC110502151
TU2070925 other downstream 179532 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 2048389 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 2048389 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 2380632 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 2779732 38208790 ~ 38213187 (-) False G1807731
TU2071828 other upstream 452030 41447899 ~ 41465647 (-) True LOC110501886
TU2071948 other upstream 609105 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 1390953 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 1608834 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 1681388 42677257 ~ 42677760 (-) True G1812404

Expression Profile