RNA id: XM_021579738.2


Basic Information

Item Value
RNA id XM_021579738.2
length 2385
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110501886
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41447899 ~ 41523764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGTTTGACTACACCACGTGATGAAACCTACTTCCTCTAAATGTAAAACTtgcactctttctctctatctcttttctTTTTGTGATCTGAGGCTGATTGATTTGATAGAAAGATGGCGGGGACGAGAATCACCAGTCTTCAGAGCGCAGGGAATCAGCCGCCTCTGATTCTTCCCCACCAGGTGACCGGAGCAGTACCAGGAACGGTCCAGATGCGTATTAAGACCTCTCAGATCAGCGGGGATCGCCTGAGTCAAACCAAGTCCATGGTCCTGCAGGACCCTGACTTGCTTCCCAGACCTaTCTCTCGCCACCGGAGGAACCAGTCTCAGCATAACGTTGGTGAAGCCGTAGAGACTCCTGTTGTTTTGAATGGTGAATATTTGAATAAAGCCAAAATATCCGAAGGAGGCAAAAAACTGAGGAAGAATTGGACTTCAACTTGGGTAGTCCTGGACACGGATAAACTTCTGTTTTATAAAGACAGCAAGCAAGAAGCCCTGACAAATTTGAAACCTGGATGCAGTCCTGATGGGATGGATCTCTGTGGGGCTGTGGCTGAATGGACAACGGAGAAGTCCAGCCGGAAGAACGTGCTTCAGATAACAACCAGCTCCGGCAGTGAGTTCCTTCTCCAGGCTGACAATTACCACACTATTTCTAAATGGCATGACGCTATTAAAAGGACAGCTGACTATTTGTCTAAAGGAGCTGCTGGGAAGGCCTCTGATAAGCCTGGCATACGAAGGGCAAACAGCACAGAGTACCTGCCTAGACATGGGTTGCCGAGCAAGACCCTGTCACTGCCAAGACCTTCACCGGAGTCCCTCTGCACAAAGGAACCCAAACCTGAACACAGACGCTCACTCAAAGTGTTCAAGTCTTCCAAGCTCACCTACAGCATGTCGGACAGTGCTGATAAGAATGGGGTGAAGAACAGACTCAAAAAGTTCATCACAAGACGGCCCTCTATGAAGACTCTACAGGAGAAAGGCATCATCAAAGATCGAGTGTTTGGGTGTCCCTTGTTGGCACTTTGTGAGCGGGAAGGGACCACTGTGCCAAATTTCGTCAGGCAGTGTGTGGAGGCTGTTGAAAAAAGAGGTTTAGAGGCTGATGGCATCTACAGAGTGAGTGGTAATCTTGCCACCATCCAGAAGTTACGATTCTTGGTTGACCAAGAGGTGGAATTTAACCTGGACGACAGCCAATGGGAGGACATCCACGTTGTCACCGGGGCGCTCAAGATGTTTTttcgggagctgccagagccgctgtTTCCCTTCCCATTCTTTGAGCTGTTTGTGGAGGCCATCAAGACGAAGGAATGCAAACAGAAGGTACAGGTGATGAAGAAGCTAGTACTTCAGCTCCCTAAACCCAACCAGGACACCATGAGAGTACTCTTCAGACACCTGCAGACgaTTCTGACGTGCTCGCAGAAGAACCTCATGTCGACCCAAGGCATCAGCATTGTGTTTGGCCCGACACTCATGTGGCCTGAGCTGGACTGTGGGAACATGGCGGTCAACATGGTCTATCAGAACCAGATAGTGGAGTTCATCCTCATTGAGAGCCCAGAGATCTTCGGCCTGCAGAAGAAGTGATAGGGACATTTCATCTACAGCTATGGATGAAACAGACAAGAGGACTTACTGTGCCCTAAGCTTGGAGCGAGTTGCTagtattactgtaatatattattaATAGGCAGGATGTACACCTTATGTTAAAGTGTTAGTCATTTAAAAAGGGGATATCATTTATATTTTATTatgaactgggtggtttgagccctgaatactgattggctgacagccgtggcatatcagaccgtataccacgggtatgacaaaacatgtatttttactgctctaattatatTGGTAACCAGttgataatagcaataaggtacctctAGTGTCTGTGGTATAGGGCCAGtttccaggcactccgcgttgcataagaacagctcttagccttggtatattggccatagaCCACACCCCCTCGAGCCTTATTGCTTAACTATATCACTATTATTTCTGTCAGTTTGAACCCAGTAACTAAACTGTATTTGGTGAATTTTGCATTAGTAAATCCATAACAGTAAAGGACAGTATTTTGTGCTCTGATTTGTCCGTTGCCTTTTACTGCACAGTTATCATGAAAGAAGTACGCACACAATAAGTGATGCTATGTTGAGTTGTTTGTGCATACGTGTGCCTGTGTGATGCATTGTTTTTATTTAAGTCTTTGAATGAGCATCATCCTAAATACCAACTCCGAACTGCAGCCGTCTGTgagtatctgttttttttatattcTATGCAAATGGAGACTGTCTCAGACACATTTGGAAATTAAAAAGAAGCCTTTGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071812 lncRNA downstream 16869 41430763 ~ 41431030 (-) True G1810926
TU2071797 lncRNA downstream 36200 41411476 ~ 41411699 (-) True G1810912
TU2071796 lncRNA downstream 37811 41409402 ~ 41410088 (-) True G1810911
TU2071794 lncRNA downstream 41472 41406165 ~ 41406427 (-) True G1810909
TU2071786 lncRNA downstream 50218 41397468 ~ 41397681 (-) True G1810901
TU2071928 lncRNA upstream 65466 41589230 ~ 41590498 (-) True G1811025
TU2072083 lncRNA upstream 119005 41642769 ~ 41642992 (-) True G1811165
TU2072087 lncRNA upstream 122238 41646002 ~ 41646266 (-) True G1811169
TU2072162 lncRNA upstream 240863 41764627 ~ 41764828 (-) True G1811240
TU2072202 lncRNA upstream 268670 41792434 ~ 41792652 (-) True G1811279
XR_005038969.1 mRNA downstream 627 41439948 ~ 41447272 (-) True LOC118943638
XM_021579736.2 mRNA downstream 396412 40992915 ~ 41051487 (-) False LOC110501883
XR_002470265.2 mRNA downstream 459688 40942404 ~ 40988211 (-) False LOC110501882
XR_002470267.2 mRNA downstream 459688 40945385 ~ 40988211 (-) False LOC110501882
XR_002470266.2 mRNA downstream 459689 40942404 ~ 40988210 (-) False LOC110501882
LOC110502151 mRNA upstream 88798 41612562 ~ 41613136 (-) True LOC110502151
XM_021579741.2 mRNA upstream 99057 41622821 ~ 41624796 (-) True LOC110501887
XM_021579742.2 mRNA upstream 145132 41668896 ~ 41743824 (-) False LOC110501888
XM_021579743.2 mRNA upstream 178832 41702596 ~ 41743824 (-) True LOC110501888
XM_021579998.2 mRNA upstream 241199 41764963 ~ 41767178 (-) True LOC110502131
TU2070925 other downstream 634512 40736648 ~ 40813387 (-) True LOC110501878
TU2068897 other downstream 2503369 38944136 ~ 38944530 (-) False G1808299
TU2068898 other downstream 2503369 38944136 ~ 38944530 (-) True G1808299
TU2068420 other downstream 2835612 38575866 ~ 38612287 (-) True LOC110502145
TU2068217 other downstream 3234712 38208790 ~ 38213187 (-) False G1807731
TU2071948 other upstream 81210 41604974 ~ 41605231 (-) True G1811042
TU2073040 other upstream 863058 42386822 ~ 42389273 (-) True G1812079
TU2073346 other upstream 1080939 42604703 ~ 42605020 (-) True LOC110502155
TU2073410 other upstream 1153493 42677257 ~ 42677760 (-) True G1812404
TU2075666 other upstream 2986643 44510407 ~ 44553420 (-) True LOC110502171

Expression Profile