RNA id: XM_036959451.1


Basic Information

Item Value
RNA id XM_036959451.1
length 7367
RNA type mRNA
GC content 0.53
exon number 31
gene id cfap65
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47476398 ~ 47553609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATTATTTCTATGGAAACTGGAGCATGGATGACTACTGTTGTTCTTAGCACTGGATAAACAGTGAATGAAATGTCTAAACTGATGTTTATTTCATAGTATTACATTTGAATGAGAGATGTTGGCTGAGGTTCCAGGGAACCCTCTAAGCTCTGGCCTCCTCTGGACAGCCACCCGTGGTAAAGATGAAAAGCGCCCAGGCCTAACCCTACAGCGGTCTGGGGATGCCCAGAGGAAGATGCCCTCGCAGCGTTGCTGCTTCCTCGGGGTAGAGACCTGGGAAGAGCTGAAGTGGGAGGACTGGGAGCTGGGAGGGGAGTTCACTAAGACCCTGCTGCTGAAGAACATCCATAGTAAACTACAGAAACTACGTTTCAGgcCTCCTGCGTCAAAGTTCTTCACCACCCTGTTTCCTCAGATCATCACTCTGAGTCCTGGAACGTCTTTTTCTCTTCCTGTTACATTCCGCCCCCTTGATAGGTGTGAGTACCAGGACACCATAGAGTTCCACAGTAAAGATGGGTTGTTCCAGGTGTCTCTGAGGGCGACCATACCTCACCATGCTCTGGACGTACCCGAGTCTGTCCTCCTACCCCCCTGTGCTGTTCTCCACCAATCACAGACCGTCTTCATGTTCCGCAACGCCAGTAAGCTACAGACAGGTTTCCGGTGGGAGGTGCCCTCTCCGTTCCAGCTGTGTCCAGAGAGCGGAATGCTGGAGCCGGGTCAGGAGTGTAGAGTCGCGGTGCTCTTCAGACCACGGGAGGCGTTGGTCTACCAGGTCCAGGCTAGCTGTGCCTTCGGGGACGAGGGAGAGAACAGCTGTACTGTGCTCCTACAGGGCCTATCAAAGTACCCGTTCCTTCAGATCAGTGCCCCGGGTCAGGAGGAGGGATGTAAGGTGCTGGAATTTGGCAATGTGCCTGTCGGCTGCAACATGGAAAGACACTTTGAGATTCTCAATCCATCCTCAATAACGACTTCCTTTAGTCTGTCCAGGATGCAGCGTCCGCCGCTGTCAGAGTCAGTGTTCCAGTGTGGTATCCAGAAGGGAGAGGTGGCTCCGCGTACCTCCATCAGGGTGCCTGTGATTTTCTCTCCTGGAACTGTGGACAGCACCACTGTGGACTACCTGTCACTCACCTGCCCCGGGGCGCTCAGCAAAACCCTGCTCAAAGTCACCGGCACCTGcatagGTCCTCAGGTGTCCCTGTCCTCCTCCATGCTGGACTTTGGCTGTGTGGATGAGGGTGAGGAGGCCTTGCGTACCGTGGACATCATCAACTCCTCCTCTGTGGAGGCCCAGTACCAGTTTGACTTGGACGCCACAGGGCATAGTGTCTTCACCTTGGAGCCAGCCTGTGGTACCCTGCCACCCAACAGCCACCGGCGCCTACGCCTGCTCTTCAGACCACACCACCCCATGGGACATCACAGGAGGGTGGTCTGTCTGCTGCTACACAGGGAGCCTCTGTTCCTGGACCTGATAGGGACCTGTCACTCTGAGCAACTGAAACCAGCCATCCTTCACCCCAGACACCTGGTCCTGTACCGGCAGCACCTGGCCCGGGGACTCACCTGCTACCCTCCTGATGTACTCGGTGCCATGCTGGCAGAGGACAAGATCCAAGTGGACCTGGAGGGAGCTCTGATGTTACAAGAGGATCCTGCTGCTGTGCCAGAGAAGAGTCCTATGGAGGAATATTATCAAGGCTGTGCAGGGGGCAAGGCGGAGGCTGAGCTAGGAGGCAGAGGTGAGGGGTCCAACAGTTCCCACATCACAGTGGATCCCCCAGAGTTGCTGTTCCACAATGGCTCCGTCTCTACCTCGCAGTCTGTGACTCTCTCCAATCACACCAAGGGCAAGCTCAGCTTGATCTGGACCCCGGCTCCTAACTCCTCCTTCTCCGTCACACCCTCGTCATGTGATCTGGGACCCCTGAAGTCGACTGCTTTCAGAGTCAGCTACACGCCCAAGCAACACAACACCTTCCATGGGGCACAGCTAGAGTGCTTCGCTCTCTACAagGTGTTGAGGGACCATCGGCAGGTAGAGGACCGTACCTTGTGCCCTCCCTGGTGTGTCACAGTCCGGGTCATTGGACACTCCTTCCAGCCTGGCCGGGAGCACTTCATCCCCCGGTTCTCCTTGCAGCGCCCCCGAGTGGTCTTCCCTGCTCTGAGCCTGGTCTCCTACAGGACCGTGCTCCTGGAGAACATGGGAGACCTACCCTTGGTGTTCAGGCTGGACCCAGAGGAGTGTCCTTCGGTGTCTGTTCAGCCCACCAGCGGCCTGGTCCAACCTGGACACCACCAGATTCTCACCCTCAGGACCACCCCGGCAGAAGACTGCCCTGCCAAGCTACCCATCACCCTGCACTTCAATGCCAGTCCCAAGCACACCCAGGAGCTGTCGGTGGTGAGTGTGGTAGAGAAGCCTTGTCTGTCTCTGGAAGGAGACGGTAGTCTGTTCTTCAAACCCACGGCGATGGGCTCCCGCTCCCAAAGCCCCTACAGGGTCAGGAACCTGACCAGGTTACCTCTGAGGTTCCGCTGGAGGATCCCCGTACCTGACCAACGTATCATCTCTGTGGCGCCTGACACGGGAGTCCTGCAGCCCAATGAGACcatgGTGCAGACGTGGTCCTTCACCCCATTTGAGGAAATGGTTTACAATCTGAAGCCCAACCTGACCTTCTGGCCAATCCAGACGCCCGGATGCAGGAAGTCCCGCCTCCCCCTGAAAGTAGTGGGCATGGCCTCCAAAGGATCCATCCAGgcagaGCATGGGGTGCTGAATCTGGGGGAGGTGTTGGTGGGAGACTGTAGGTCCTTCGAGGTGCCTCTCATCAACAATGGTTCCTGTTCTGTCAGCTTCTGTTTGGCTGTACAACAGAGCCTGCTAGACCCGGGGTTGCCTGAGAACTCACAGAAGAAAGACCCTGTTGCCCTGGAGCTGGACTCTGAGAGAGGCACCATCCCAGCTCGCTCCAGGCTGCTGATCCGCTCCACCGTGAGGCCTGCCAGGAGGACCAGATACTGCTGGGACCTCACATACCAGACACTCAGCTCTGCAGgcTCTGTGCTGGATGCTCCCCAGGCTCTGTGCCAGGTGCAGGGTGAAGGGGTGTTCCCCACCCTGGAGGTGACAGATGTGCGTTGCAGCGGCAGCGTGGAGGGGCTCAGCAAGCTGCAGATCTGGAGCCTCTTTTCTCTGGGACACCTCAACGCCCACCTGCAGCGAGACCCCGCCCCTCCGGAGCTCACCTACCGGGTGCCCACCAGACACAGTCTGCGTCGCTGTCCCTCCATCTTCACGGCGGCCATGTTGGATTTCAACTTCAGCGCTGCTCCGCTGGGCTCAGACCCCTCCAATGTGCTGCTGATGTTCGAGAACACTGGGAGCATCCCTGTCGAGTGGTCGTTCCTGTTCCCAGAAGACCAACAGATAGAGCTTGAGTACTGGGCTGAGACTGGGGAGTTCAGCGCTACAGAGCTCCACCACATGAAGGCGCAGGATAACAGGCTGTTTAATATAGCACCCCGCTCTGGTAAACTACACCCAGGACAGCAGAAGGCAGTGACATTTAGCTACAGACATAACTTTGTTGGTACTGACCGTCTCCCAGTCCTGTTCAAGCTGTCCCACGGCAGAGAGattctgTTGAACTTCATGGGAGTGacggtggagagagacagacactacCTCCACTTCACCTGCACCAAGCACGTCTTTGCCCCAGTGCCAATCGGGGGGTTCAGTCCACCTAAACAGGTGTATGAGCTGTACAACGGAGGGGCTGTCCCTCTGAGGTACCGTGTGGACACAGAGCCCCTTGAGCAGCTGACGGCTGATAACTTTGGTCACCCCGTGCTGCAGTGTCTCAACCCCCAGGGAGAGGTGACGCCTGGCAGGACAGCCCTGCTGGAGTGGGTCCTCTCCCCCCTGGAGGCCAAGACTTACAGTGTGGACATCTCTATCCATGTGCTGGAGGGAGACACCATGCTGTTGACGTTTGAAGGCTGTGGGTTTGATAACAGTGTGCTGGGAGAGTCGGCACCACTACAGCTTCATGATGGCTAcatgtctgtccccagcacacaGAGGATGGCCCTGCCCAACCAGGTGCTGTTCCTGTCAGAGGAGAGATTGTGTCTTGGGGACATCCCAGTCTGCTCTCGCTCCACACGGGTCCTGTTCCTGACGAATGTCTCCCACAGCGACAGAGTCCTCTACAACTGGAACCTGACTGACCAGTCAGTCCAGATCTACCCAGAGCACGGTGCTCTGTCTCCAGGGGAGAGCTCTCTCTGTATCCTGACTCTCCAGGCCTCTGGCAGCCCCAGCTTCTACCAGCTAGACATCATCTGTGAGACTCTGCCTCCTATCTGTAGCAGCAGTGCCGTGGTTGGGGGTATGTGTACCAGGCCCAGCCGTGCAGAGCGGAGGGCCCAGAGAGAGGCTAGCCAGGTATGGAGGAGACCTGAACCGCCCTGCCCCACCCTGCTACACCTGGGGGTCACCGCCCGCTCACACTCCCTCCTAGAGTTCCAGACCTTCTTCCCCTCCCTGCTCAGCACACACCACATCAACAGGTCGGCCCGGCCCAATGTGACCCGTTGTGGATCCCGTCAGAGCAGACCTCCATCTGTAGACATGCCTCCTCTCAGCcacggaccagagagagagatcattaccCACACGCTCACCTCTATATTCAGGAGCCTCCTGGACGACCCTCACTTCCACCACTCTCTGGTGAACGGTGTGGCTGAACCCGTGCCCTACTTCACCCAGCTGAGACAGACTGCCTACACCCCTACCACACCTCTCCCTGGGGCTGCTACGCCTTATCCTGGAACCAGGGAGGCTCCTCCACCTTGCCCCCCTACTCCTCAGCTCCTCATGGGGGGCAGTCTGTACAGTGCTGGGGTAACAGAGGTAACAAAGCAACAGCCACAGACCCAGAAGCCAACAGTGAAGCGAGAGCGTCAGCTCAACGTTCAGGAGACCATCCGCAGGTTGCCAGAGTTCTGTGACGTGACAGAGGAGGTTCTCCTCAACACCTTACAGAACCTGATGATGGAGGCCTTCCTGGGAGAGCTGGTCCTTACAGCCAGGCCACGAATCATCGCTCTGCCTCCCGTCTCTGCCAGGAGGAACAGCTGTGGTTCCAGGAGGCTGTCCAGAGGTGGAGCTGACCCAGACAGGAGCAGAGAGACCAGGGGGGGTTCCTCTGGGTCTTAGCTTCAGCCCACCCTCTTCACTACTGGCCAACCTGGCATGGACCTAACCAGTGTTTTACTCCACACAATGCCTCAACATTATTTCATACCCAATTAATaactattaaaaataaaaaaaaagttcaaCAAAAGTTGATTTGACCATTTTAAAATAGCGATTCACGTCTCGATGCCCTGATCTACAGTGTGATTAGTACTTTCACACCCTCATTTACCTGATAGTATCTCTGTGAAGCACTGGACAGTTTCACTTCACTATATCTAGCCTTTATACTAAACCCAAAACATTGACAACAGACCattccaaaaacacattttttgtttaTTAAAAAGGAATTCAGTCCACAGTAGTTAAGACTTTGGCacctacaatatatatatataaaaaaaaaataacaaaaacgtgTACACCCCAAATAGCATTAAAACAAAATGCTTGGACAAAAGAGATAAATTAAAAACAGCAGTTGAGGTGGGTATGAAACAATGCAACTCAACTGGCAGCCATTTTAGAGCTTCCGTTCACAAAAATGGCAGAAGTACATGAACACAACAGATACAATTCTGGACATTGAATGAACACCCACTTGCAGTGTACCTCTGTGATACAACTCTTGCATTAAAGCAGTGGTATTCAGCGGGGaccccattccccccccccccccaccccccgatTGAATTTCTGGGGACCAAATTTCTTATGATCCCACCCCATATCAAATAACAaccttcaaaaaaaaaaatattctacaTAAACGTCTTCTCAAAAATGaaaagaaaccaataaatacatttactcaataacattttatttttctaaTTATTTCTCAAAAACGTTTGTATAatgtcccatacaataatctgtactcTTGGTTTCTGGTTCttcatttttaaaatatatatatatatatatatatatatatataaaaatggcgACCCCACTCAGACCAcgactttgaataccactgcaTTAAAGACCTTGGTTTTAAAaaggaatgttttttttgtttttttgttagaCTGGTAGTTGAAGTCTCCAAAGAGATTTGAAATGCATGAAGACAAGGTGCTCATGCGAGACCTCTGTATCCAAGTGgttcaccatatagggaatagggttatacGTCAAAACAGCGATCTTATTTCTCTGTAGAACCATTTGAGCTCGGACGGGATCGGTTGGAAATATTATCCATTCCAGATAAGTCACGATGCCGGCAAGAGTTTCCCCCATATTGTAAACTTCTGAATGGGGTAAAATCTCACATCAGAGAGAGAAAGCTCTGGTTCGGGCAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGATTAGGAACAGCACAGAGTAGGAACAGAGTAGGCTACAGGAGGAATGGCAACAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGAATGGCAACAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGATTAGGAACAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGAATGGCAACAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGAATGGCAACAGCACAGAGTAGGAACAGAGTAGGCTACAGGAGGATTAGGAACAGCACAGAGTAGGAACAGAGTAGGCTACAGGAGGATTGGGAACAGCACAGAGTAGAAACAGAGTAGGCTACAGGAGGAATGGCAACAGCACAGAGTAGAAACAGAGTAGGCACAGGAGGAATACTGAACGGCTTTAGAACCTTTACAGATTTTCCATTTTCTCTTTTCATGGGAATGTCTCGAAGGACTAGGTAGGACAACGGAACCAAACATTAAAATATAAAAGACCCTTTCTttgccttgggggggggggggtattttgaAGTGACGCTATAGAAAGGAGTGGCAATGTGGAGAAGCAGCAGGATGGTGGTTAATTGGTCAGACCAGACCACTGATCAAGGTTAGTGAATGACAGGAACAGGAAGGCAGCACGTAGTTGACACTTCCTACAGTAATATGTTCCATGGAGTACTTCTGTGACGGCACGGGAAGACATCGCCATAAAAATACAAGTCTATAAGAATTCAATAGGAATTATATTTCCATGGGCGACACATAGGAAGTCCCACCAAGTTgactactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2078706 lncRNA downstream 75581 47400985 ~ 47402047 (-) False G1816929
TU2078690 lncRNA downstream 87232 47389657 ~ 47390396 (-) True G1816915
TU2078672 lncRNA downstream 118128 47359037 ~ 47359500 (-) True G1816897
TU2078671 lncRNA downstream 120955 47356075 ~ 47356673 (-) True G1816896
TU2078597 lncRNA downstream 190206 47280767 ~ 47287422 (-) True G1816836
TU2079284 lncRNA upstream 23380 47576989 ~ 47577229 (-) True G1817341
TU2079299 lncRNA upstream 60607 47614216 ~ 47614419 (-) True G1817352
TU2079300 lncRNA upstream 61573 47615182 ~ 47615985 (-) True G1817353
TU2079315 lncRNA upstream 90761 47644370 ~ 47645779 (-) True G1817368
TU2079326 lncRNA upstream 123667 47677276 ~ 47677970 (-) True G1817376
XM_036959449.1 mRNA downstream 217162 47177045 ~ 47260466 (-) False trpm2
XM_036959447.1 mRNA downstream 217170 47170403 ~ 47260458 (-) False trpm2
XM_036959448.1 mRNA downstream 217171 47170403 ~ 47260457 (-) False trpm2
XM_036959445.1 mRNA downstream 373800 47086871 ~ 47103828 (-) True LOC110501994
XM_036959446.1 mRNA downstream 373823 47086871 ~ 47103805 (-) False LOC110501994
XM_036959453.1 mRNA upstream 75271 47628880 ~ 47632649 (-) False LOC110501961
XM_021579839.2 mRNA upstream 75271 47628880 ~ 47635640 (-) True LOC110501961
XM_036959458.1 mRNA upstream 179610 47733219 ~ 47834252 (-) False ptprna
XM_036959457.1 mRNA upstream 179610 47733219 ~ 47834254 (-) True ptprna
XM_036959461.1 mRNA upstream 343448 47897057 ~ 47972131 (-) True tmem198a
TU2079216 other downstream 4244 47471294 ~ 47473384 (-) True G1817287
TU2078705 other downstream 75581 47401122 ~ 47402047 (-) True G1816929
TU2078613 other downstream 250982 47225551 ~ 47226646 (-) True G1816841
TU2077141 other downstream 1636646 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 2803740 44673447 ~ 44673888 (-) True G1814480
TU2079567 other upstream 508440 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 715178 48268787 ~ 48291496 (-) True G1817668
TU2079931 other upstream 905417 48459026 ~ 48460040 (-) True G1817836
TU2080079 other upstream 915989 48469598 ~ 48470035 (-) True G1817968
TU2080196 other upstream 1073755 48627364 ~ 48627846 (-) True G1818059

Expression Profile