RNA id: XM_021579829.2


Basic Information

Item Value
RNA id XM_021579829.2
length 2405
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110501953
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48057851 ~ 48064453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGTCAGAGTGATGCAAGTTAACGCCTGACGGGCCTTCTGAGGTGGCAGGCTAAGGGGCAGAGCCGGTAGCGGTGGGTAGAGGACAGGGCAGTGGCACCCACAGTGACCCGATGGGCGGAGTGGCAGAGAGGGATAGAAGGGCAGGCCTGGCAGGGTGCGGTCTCGAGTGGCAACTGATGCCTCGAATTCCCAATTCAACTGGAAAGGCAAAGCGGCAGAGACAAAAAAAACGGACAAGAAGGAGAAACGCCAGAACCAGTAGTGTTCCTCCTCGTTTGACATTGACAGCACCTCAGTGGCAAAACCACAGCATCAAGAAGACAATCTGCGACCACTGTTCACTACAGAAGATCTACTTTGAACCTGTTTGTTTAAATGAGCAGCCTTGTCAACTCCATACCCATATCTGTTGGCTCCCGACGACGAGAAAGAACAAGTTAAGCAGCGACGTTTGGACAACACCGGACTCGGACCCCGGAGACATTGAACTTTTACCCCTGCTACCGGTTCCATAAAACAAAACATTCGGCTAAATGCCTGTTTTTTGGGGCTTTTACGGACAGTTGCTGTGCGCACCGAGGATGGCGTGGATAAGGCTTATATAATATTGAAATATTCTGTCCCTTAACCTCCATTCCTTACCCTGTGGGGGGAACACGGAGCATCCAGGGGAGGGGGTAGCTTGAGACACCTCCGCAACCTGTGCCACCTTACCACTCCGCTTCGGAGTGGCCGGCCCTGCCGGTCTGGCTGGGATGCGTCTCTCCGTGCTTGTAGGGCTCTTCATCGGCTGCGCCCTGTTTCTCGCACCTGTAACCGAGGGCTGTGGGCCGGGGAGGGGATACGGCAAGAGACGTCTGCCAAAGAAGCTCACACCCCTCGCTTATAAGCAGTTCAGCCCAAACGTTGCCGAGAAAACACTGGGCGCCAGTGGCAAACACGAGGGCAAAATAACGAGAAATTCAGAACGGTTCAAAGAGCTCACTCCCAACTATAACCCTGATATCATATTTAAAGATGAGGAGAATACGGCTGCCGATCGACTTATGACCCAGcGTTGTAAAGACAAGCTGAACTCCCTGGCCATCTCTGTGATGAACATGTGGCCTGGGGTGAAGCTGAGAGTGACAGAGGGCTGGGACGAGGACGGGCACCACTCAGAGGACTCCCTCCATTATGAGGGAAGAGCGGTGGACATCACCACCTCAGACCGGGACAGGAACAAGTACTCCATGCTGGCTCGCCTGGCCGTGGAGGCTGGCTTCGACTGGGTCTACTATGAATCGAAGGCACACGTGCACTGCAGTGTCAAGTCAGaGCACTCAGTAGCAGCTAAGACCGGGGGCTGTTTCCCTGGTCGTTCTCTGGTCACTCTGGACGACGGGAGCAGCAGGGCTGTCCAGGACCTCCAGCCAGGTGACCGGGTCCTGGCCTCCTCGGGGGCTGACGGCAGCAGGAGCGGAGGAGACCTCGTCTACAGTGAGTTCTTCACCTTCCTGGATCACGAGCCTGCAGCCAGGAAACAGTTCTACGTGTTGGGAACAGAGACGGGAGCAAACCTGACCCTCACCGCGGCTCATCTTGTGTTCGTGACCGAGGCTAACTGTTCAGTGGGCGAATCGGGTGCTGTCATGCGGACTATGTTCGCCAGCGACGTACGGCCAGGACAGTGTGTGCTGACTGCAGGGAGAAACCAGGGACTACAGGGAATCCTCTCCCAGGTCATTTGGGTCCACATCCAGATGGACACCGGGGCGTTCGCCCCTCTGACACGCCACGGCTCACTGGTGGTGGACGGCGTTCTAGCCTCGTGCTACGCTGCTATGGACCAACACCACCTGGCCCACTGGGCATTTGGTCCCCTCCGCCTGCTGTACAGCTGGACCAGATGGACTGGTGCCTCTCTAGGAGACGGACTACACTGGTACTCACAAGTCCTGCATTGGTTAGGAACGTTCCTATTGGACCCTGGACATTTCCACCCCTGGGGGATGGTCATGCACGActcagagagataaagagagagaaagggaaaaaaaAGACACGGGAGGTCGCAAGTAAATTGTCCAATCAAATCTAATGTTATTTTGTCAGGTTGCTTCGTAGAAAACAGGTCTAACAGTGAAAAGCTATCTTACTGGTCCATTTCCAACAatgaataacaaataaaaataaagagtaaaaggaacatgactataaaaacgatatatacaaaagtatgtggacaacacttaaaattagtggattcggcttttTCAGCCACCCGTTGCTGCCAGGTGTATagaaaatcaagcacacagccatgcaatctccttagacaaacattggcagtagaatagccttactgaagagttcagtgactttcaacgtggcatcgtcataggatgccacctttccaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2079528 lncRNA downstream 23189 48031393 ~ 48034662 (-) False G1817541
TU2079530 lncRNA downstream 23460 48032367 ~ 48034391 (-) True G1817541
TU2079527 lncRNA downstream 27030 48030015 ~ 48030821 (-) True G1817540
TU2079511 lncRNA downstream 47205 47988167 ~ 48010646 (-) False G1817526
TU2079512 lncRNA downstream 47205 48010233 ~ 48010646 (-) True G1817526
TU2079566 lncRNA upstream 10712 48075165 ~ 48076165 (-) True G1817549
TU2079610 lncRNA upstream 64989 48129442 ~ 48130249 (-) True G1817593
TU2079545 lncRNA upstream 71954 48136407 ~ 48137488 (-) False G1817545
TU2079546 lncRNA upstream 71954 48136407 ~ 48137209 (-) False G1817545
TU2079554 lncRNA upstream 71954 48136407 ~ 48137209 (-) True G1817545
XM_036959461.1 mRNA downstream 85720 47897057 ~ 47972131 (-) True tmem198a
XM_036959457.1 mRNA downstream 223597 47733219 ~ 47834254 (-) True ptprna
XM_036959458.1 mRNA downstream 223599 47733219 ~ 47834252 (-) False ptprna
XM_021579839.2 mRNA downstream 422211 47628880 ~ 47635640 (-) True LOC110501961
XM_036959453.1 mRNA downstream 425202 47628880 ~ 47632649 (-) False LOC110501961
XM_036959466.1 mRNA upstream 75308 48139761 ~ 48220042 (-) False LOC110501956
XM_036959467.1 mRNA upstream 75308 48139761 ~ 48220042 (-) False LOC110501956
XM_036959468.1 mRNA upstream 75308 48139761 ~ 48220042 (-) False LOC110501956
XM_036959469.1 mRNA upstream 75308 48139761 ~ 48220042 (-) True LOC110501956
XM_021580043.2 mRNA upstream 440992 48505445 ~ 48645921 (-) False LOC110502188
TU2079216 other downstream 584467 47471294 ~ 47473384 (-) True G1817287
TU2078705 other downstream 655804 47401122 ~ 47402047 (-) True G1816929
TU2078613 other downstream 831205 47225551 ~ 47226646 (-) True G1816841
TU2077141 other downstream 2216869 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 3383963 44673447 ~ 44673888 (-) True G1814480
TU2079734 other upstream 204334 48268787 ~ 48291496 (-) True G1817668
TU2079931 other upstream 394573 48459026 ~ 48460040 (-) True G1817836
TU2080079 other upstream 405145 48469598 ~ 48470035 (-) True G1817968
TU2080196 other upstream 562911 48627364 ~ 48627846 (-) True G1818059
TU2080631 other upstream 1061061 49125514 ~ 49126117 (-) True G1818393

Expression Profile