RNA id: TU2057200


Basic Information

Item Value
RNA id TU2057200
length 585
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1797632
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29743321 ~ 29743905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGAATCACATGAAAAAGCTTTATTGATACACAGCTTAAACAATGACAAATACAGTGCTTTGCCGTCAAGCTTAGAATGTGTGAAATATTTAGCGATGTCACTAGAAGGGGACAAATAGTAGTGTACTCACTGTTACAACTTCAATCATGAAATATCTTATTTGGCAAAATTATACAAAGAAGTAGGAAAAATACAGGATCCAGTAAACACAGTTTGCCTTCCACGGTGCAGGACAAGACGCTAGTAGAACTGCAACAACGACAGTAACAAAATAGACTTATCTGATAGTACATCTCATACTATGGAGTTCTCTCTGCGGACGCACATTCAGCTTTAAATAACACATTATAGCGGCAGGCAGCCAGGCGGCCTGTGAAGGAGCGCATTGGAATGTACAGTTACACTAAATACATTGATAGATACAGGAGGGCCCGACAGCGACCAGCTGTCTATATGTTTACAATCACAACTCAACAAATAAACATATTACAATCTTCCTctgaaaaaaaatatggataCTGTGTGTTATTGTActgtgacatacagtgccttgcgaaagtattcggccccttgaactttgcga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057199 lncRNA upstream 548 29742481 ~ 29742773 (+) True G1797631
TU2057194 lncRNA upstream 7310 29735696 ~ 29736011 (+) True G1797626
TU2057158 lncRNA upstream 57335 29685731 ~ 29685986 (+) True G1797590
TU2057147 lncRNA upstream 63141 29679877 ~ 29680180 (+) True G1797579
TU2057143 lncRNA upstream 64902 29678132 ~ 29678419 (+) True G1797575
TU2057148 lncRNA downstream 1518 29745423 ~ 29746868 (+) True G1797580
TU2057255 lncRNA downstream 89160 29833065 ~ 29833383 (+) True G1797678
TU2057259 lncRNA downstream 91594 29835499 ~ 29836412 (+) False G1797680
TU2057257 lncRNA downstream 91659 29835564 ~ 29836412 (+) True G1797680
TU2057261 lncRNA downstream 93209 29837114 ~ 29837376 (+) True G1797681
XR_005038972.1 mRNA upstream 121247 29621112 ~ 29622074 (+) False LOC118943646
XM_036959066.1 mRNA upstream 154238 29500150 ~ 29589083 (+) False LOC110501709
XM_021579458.2 mRNA downstream 114850 29858755 ~ 29872101 (+) True LOC110501715
XR_005038816.1 mRNA downstream 150221 29894126 ~ 29903673 (+) True LOC118943587
XM_021579460.2 mRNA downstream 168376 29912281 ~ 29915808 (+) True LOC110501716
XR_005038966.1 mRNA downstream 173868 29917773 ~ 29933035 (+) False LOC118943632
XR_005038967.1 mRNA downstream 173879 29917784 ~ 29933035 (+) False LOC118943632
TU2055989 other upstream 733048 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 733048 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 733048 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 759095 28977890 ~ 28984226 (+) False LOC110502085
TU2054913 other upstream 1651205 28091565 ~ 28092116 (+) True G1795550
TU2057150 other downstream 287 29744192 ~ 29744854 (+) True G1797582
TU2057325 other downstream 179652 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 756751 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1144756 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1144756 30888661 ~ 30891067 (+) False G1798397

Expression Profile