RNA id: TU2057148


Basic Information

Item Value
RNA id TU2057148
length 1446
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G1797580
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29745423 ~ 29746868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtagttggcaAACTCTTATAGGCTCTATCTacactctctccccatctcccataTATCGCCATACATTCCTCTTtaattacatacattttcccccatttaatacattttctccTAGACATTTCAGGAATGTGTTTTCTAATACAGGTTTTAAAGTTCTTAACAGTGTCCCAATACATTAAGGTTATAAACACAATGTGTGTGAAACATTTTTCAGATTTCTAATGGATCAGAAACATTTGGCAGCACAGAATCAGCATTAATACACAAGGCATCAGCAGtggcctactgtactgtatgctgTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTTAAGCAGTTTGACAACGTGGAGTCGACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCGGTCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGAAGTCTACAGCCAAGCAGTTTGACAACGTGGAGTCTACAGCCAAGCAGTTTGACAATGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTTTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTACAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACATGGAGTCTATAGCTATGCTGTCAAGCAGTTTGACAACGTGGAGTCTATAGCTATGCTGTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057200 lncRNA upstream 1518 29743321 ~ 29743905 (+) True G1797632
TU2057199 lncRNA upstream 2650 29742481 ~ 29742773 (+) True G1797631
TU2057194 lncRNA upstream 9412 29735696 ~ 29736011 (+) True G1797626
TU2057158 lncRNA upstream 59437 29685731 ~ 29685986 (+) True G1797590
TU2057147 lncRNA upstream 65243 29679877 ~ 29680180 (+) True G1797579
TU2057255 lncRNA downstream 86197 29833065 ~ 29833383 (+) True G1797678
TU2057259 lncRNA downstream 88631 29835499 ~ 29836412 (+) False G1797680
TU2057257 lncRNA downstream 88696 29835564 ~ 29836412 (+) True G1797680
TU2057261 lncRNA downstream 90246 29837114 ~ 29837376 (+) True G1797681
TU2057267 lncRNA downstream 97209 29844077 ~ 29844704 (+) True G1797687
XR_005038972.1 mRNA upstream 123349 29621112 ~ 29622074 (+) False LOC118943646
XM_036959066.1 mRNA upstream 156340 29500150 ~ 29589083 (+) False LOC110501709
XM_021579458.2 mRNA downstream 111887 29858755 ~ 29872101 (+) True LOC110501715
XR_005038816.1 mRNA downstream 147258 29894126 ~ 29903673 (+) True LOC118943587
XM_021579460.2 mRNA downstream 165413 29912281 ~ 29915808 (+) True LOC110501716
XR_005038966.1 mRNA downstream 170905 29917773 ~ 29933035 (+) False LOC118943632
XR_005038967.1 mRNA downstream 170916 29917784 ~ 29933035 (+) False LOC118943632
TU2057150 other upstream 569 29744192 ~ 29744854 (+) True G1797582
TU2055989 other upstream 735150 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 735150 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 735150 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 761197 28977890 ~ 28984226 (+) False LOC110502085
TU2057325 other downstream 176689 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 753788 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1141793 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1141793 30888661 ~ 30891067 (+) False G1798397
TU2058048 other downstream 1141793 30888661 ~ 30891067 (+) False G1798397

Expression Profile