RNA id: TU2057259


Basic Information

Item Value
RNA id TU2057259
length 914
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G1797680
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29835499 ~ 29836412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGATGAGGAAATGTTTGCCAATAGAACTTAGCAATTTATTACACATCAGTAATTACATGATTTCTCCGCACATATAGAATACTaggcaacatgacaacacagggtTGGTGAAAAACAATTAGCAACAATCAAACACTTTAAGGAAATGACAATCACATCAAATTAAAGtactatatacaaaatatattACAGTCAATTACACACATAGTTACACACATAGCACgaagtaaaaaaaatatcagaaagagGCTTGGCTGAGCAGTGTTCCCACAAACTAAGTTCTTTAAACAGAACGATCATGTGGTATATTAGGTCCGAAACAGCCAGCTAATACTTTTGGTACAAATTTGAAAAATATTTGGCCAAGAAGTGATCAGAAGTATCCCTGGTGAGTGGTGTGAGGCATGGAGAGTGGTCTAGGCTTCTCCAGTGCTTTCTAAAagacctacagatgtaggatcttaatttgagaaagtttgctacagcagtaaaataatcctgcagcaacaggaaatgtgaattattatctgGATTATAATAAATTGACATGTTTGTAGGGGTTTATACATTTCATTCATTAGGGAAAATTAAGTCTAAAAcctcaaagtggaaattacaaactttagaagcctttttaaaactgaaatactctacaagtttgcatttcctgctttgcAGTAAAATTCTTATCAATAAAagaatgatcaaattaagatcctacatctgtaaaccCACCCTGGACTTTTTCTAGTGAGCGGAGAGTCTTCTACTTGAGAGTGAGTACACAGGAAATGTGTTGTGGTTCCAGGGGGTTCTGTTAGAGCTGGTCACAGCTCAGTGCCAGGGTGATGTCACAGTGATGTCATATCCTCTCTCTCAGAACCAAACAGTATTGACTTTGTCCTGATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057255 lncRNA upstream 2116 29833065 ~ 29833383 (+) True G1797678
TU2057148 lncRNA upstream 88631 29745423 ~ 29746868 (+) True G1797580
TU2057200 lncRNA upstream 91594 29743321 ~ 29743905 (+) True G1797632
TU2057199 lncRNA upstream 92726 29742481 ~ 29742773 (+) True G1797631
TU2057194 lncRNA upstream 99488 29735696 ~ 29736011 (+) True G1797626
TU2057261 lncRNA downstream 702 29837114 ~ 29837376 (+) True G1797681
TU2057267 lncRNA downstream 7665 29844077 ~ 29844704 (+) True G1797687
TU2057275 lncRNA downstream 15128 29851540 ~ 29851903 (+) True G1797693
TU2057322 lncRNA downstream 74397 29910809 ~ 29911312 (+) True G1797733
TU2057574 lncRNA downstream 163499 29999911 ~ 30000210 (+) True G1797957
XR_005038972.1 mRNA upstream 213425 29621112 ~ 29622074 (+) False LOC118943646
XM_036959066.1 mRNA upstream 246416 29500150 ~ 29589083 (+) False LOC110501709
XM_021579458.2 mRNA downstream 22343 29858755 ~ 29872101 (+) True LOC110501715
XR_005038816.1 mRNA downstream 57714 29894126 ~ 29903673 (+) True LOC118943587
XM_021579460.2 mRNA downstream 75869 29912281 ~ 29915808 (+) True LOC110501716
XR_005038966.1 mRNA downstream 81361 29917773 ~ 29933035 (+) False LOC118943632
XR_005038967.1 mRNA downstream 81372 29917784 ~ 29933035 (+) False LOC118943632
TU2057150 other upstream 90645 29744192 ~ 29744854 (+) True G1797582
TU2055989 other upstream 825226 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 825226 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 825226 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 851273 28977890 ~ 28984226 (+) False LOC110502085
TU2057325 other downstream 87145 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 664244 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1052249 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1052249 30888661 ~ 30891067 (+) False G1798397
TU2058048 other downstream 1052249 30888661 ~ 30891067 (+) False G1798397

Expression Profile