RNA id: TU2057261


Basic Information

Item Value
RNA id TU2057261
length 263
lncRNA type intronic
GC content 0.41
exon number 1
gene id G1797681
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29837114 ~ 29837376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTAGCTACCTGGCTATGCTATGCCTATCTagcacaacactggaactcttacaattcaaggtaagcttttggttttacaaatgtattgccaaCAGTGTAACTGCTAAAGTGCTTATTCAACTGCTTACTGACTgcacactgtaacgttactgcataattgtagctatgttgactatgacgttactttggctaatatggtgacaacgatgtaggctgtgtgtagcggttatgatttGGCATGGAAAGGGTTTTCACCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057259 lncRNA upstream 702 29835499 ~ 29836412 (+) False G1797680
TU2057257 lncRNA upstream 702 29835564 ~ 29836412 (+) True G1797680
TU2057255 lncRNA upstream 3731 29833065 ~ 29833383 (+) True G1797678
TU2057148 lncRNA upstream 90246 29745423 ~ 29746868 (+) True G1797580
TU2057200 lncRNA upstream 93209 29743321 ~ 29743905 (+) True G1797632
TU2057267 lncRNA downstream 6701 29844077 ~ 29844704 (+) True G1797687
TU2057275 lncRNA downstream 14164 29851540 ~ 29851903 (+) True G1797693
TU2057322 lncRNA downstream 73433 29910809 ~ 29911312 (+) True G1797733
TU2057574 lncRNA downstream 162535 29999911 ~ 30000210 (+) True G1797957
TU2057602 lncRNA downstream 195635 30033011 ~ 30034968 (+) True G1797984
XR_005038972.1 mRNA upstream 215040 29621112 ~ 29622074 (+) False LOC118943646
XM_036959066.1 mRNA upstream 248031 29500150 ~ 29589083 (+) False LOC110501709
XM_021579458.2 mRNA downstream 21379 29858755 ~ 29872101 (+) True LOC110501715
XR_005038816.1 mRNA downstream 56750 29894126 ~ 29903673 (+) True LOC118943587
XM_021579460.2 mRNA downstream 74905 29912281 ~ 29915808 (+) True LOC110501716
XR_005038966.1 mRNA downstream 80397 29917773 ~ 29933035 (+) False LOC118943632
XR_005038967.1 mRNA downstream 80408 29917784 ~ 29933035 (+) False LOC118943632
TU2057150 other upstream 92260 29744192 ~ 29744854 (+) True G1797582
TU2055989 other upstream 826841 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 826841 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 826841 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 852888 28977890 ~ 28984226 (+) False LOC110502085
TU2057325 other downstream 86181 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 663280 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1051285 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1051285 30888661 ~ 30891067 (+) False G1798397
TU2058048 other downstream 1051285 30888661 ~ 30891067 (+) False G1798397

Expression Profile