RNA id: TU2057826


Basic Information

Item Value
RNA id TU2057826
length 233
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1798191
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30424079 ~ 30424311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctcatcgctacagcGGTGGAATCATGTCACAGGGCGCAGTTCTTCAcgaaactggacctcaggagcgcgtataatctggtgcgtattcgggagggagatgagtggaaaaccgcgtttagtaccacatctggccattatgagtacctcgtcatgccgtacgggttaaagaatgctccagccatcTTTCAATCCTTCGtcgatgagattctcagggacctgcacggacaGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057773 lncRNA upstream 21381 30401673 ~ 30402698 (+) True G1798149
TU2057772 lncRNA upstream 23705 30399178 ~ 30400374 (+) True G1798148
TU2057761 lncRNA upstream 75157 30348686 ~ 30348922 (+) True G1798139
TU2057717 lncRNA upstream 174529 30249320 ~ 30249550 (+) True G1798095
TU2057711 lncRNA upstream 213739 30210119 ~ 30210340 (+) True G1798089
TU2057829 lncRNA downstream 4225 30428536 ~ 30432515 (+) True G1798194
TU2057830 lncRNA downstream 8297 30432608 ~ 30432833 (+) True G1798195
TU2058056 lncRNA downstream 476674 30900985 ~ 30901385 (+) True G1798403
TU2058103 lncRNA downstream 547300 30971611 ~ 30971848 (+) True G1798446
TU2058104 lncRNA downstream 551721 30976032 ~ 30976479 (+) True G1798447
XM_021579471.2 mRNA upstream 206138 30213664 ~ 30217941 (+) False arsh
XM_036959093.1 mRNA upstream 206138 30214445 ~ 30217941 (+) True arsh
XM_021579469.2 mRNA upstream 220787 30178719 ~ 30203292 (+) False LOC110501723
XM_021579470.2 mRNA upstream 220787 30178719 ~ 30203292 (+) True LOC110501723
XM_021579969.2 mRNA upstream 298558 30120858 ~ 30125521 (+) True LOC110502086
XM_036959097.1 mRNA downstream 11012 30435323 ~ 30453758 (+) False LOC110501728
XM_036959098.1 mRNA downstream 11065 30435376 ~ 30453758 (+) True LOC110501728
XM_021579481.2 mRNA downstream 46101 30470412 ~ 30487614 (+) True LOC110501732
XM_021579478.2 mRNA downstream 81973 30506284 ~ 30519043 (+) True LOC110501730
XM_021579479.2 mRNA downstream 128050 30552361 ~ 30575546 (+) True LOC110501731
TU2057325 other upstream 498697 29923557 ~ 29925382 (+) True LOC118943632
TU2057150 other upstream 679225 29744192 ~ 29744854 (+) True G1797582
TU2055989 other upstream 1413806 29008624 ~ 29010273 (+) False LOC110501700
TU2057803 other downstream 76345 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 464350 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 464350 30888661 ~ 30891067 (+) False G1798397
TU2058048 other downstream 464350 30888661 ~ 30891067 (+) False G1798397
TU2058049 other downstream 464350 30888661 ~ 30891067 (+) True G1798397

Expression Profile