RNA id: TCONS_00051916


Basic Information

Item Value
RNA id TCONS_00051916
length 3123
RNA type mRNA
GC content 0.53
exon number 22
gene id XLOC_026655
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39970355 ~ 40054749 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATGAAGTTTAGGTTCAGACGGCAGGGAAATGACCCTCATCGTGAAAAAATCAAGCAGGATCTGTTTGCATTCAATAAGACAGTTGAACATGGATTTCCAAACCAGCCAAGTGCTTTGGCCTATGATCCCAAACTGCAGCTTATGGCTATTGGAACTAAATCAGGGGCCATCAAAATATATGGTGCTCCAGGGGTAGAGATGACGGGACTTCATAAAGACACTGCTGCTGTTACGCAGATACACTTCCTCTGTGGACAGggAAGAATACTTTCTCTTTTGGATGATAACACGATTCACCTTTGGGAGATCGTGCAGAGAGAAAACCGATCACATTTGCTAGAAGTTCACAGCTTCAACCTGCCTGGCAGGCCGGGCATCGAGAGCACAAgTGCAACTCGTGTGACGGTCATGCTGCTGAATCTGAGCTGTAATCTTCTCGCTCTGGGGACTGAAGGTGGTGGGGTTCACTTTCTGGAGTTGCCTACCCTCACACTGCTCAACAAGTCTCTGTTTCAGGACGAGATCATGCAGAGCGTTCCAGAGGAGTACAAGTGTGGAAAATCATTGGGGCCTGTGGAGTCCCTGCAGGAACATCCGAAAGACTCAGATAAAATCCTCATTGGCTACAGCAGAGGTCTGGTGGTGCTCTGGGACCTCAGCAGTCGGCATGTGGACAACCTCTTCCTGGGAAAGCAGCAGCTGGAGAGTTTGGTCTGGGAACGGTCCGGGAACAGCTTTGTTAGTTCTCATAGTGATGGCGGATACATGGTGTGGGCTGTCAGCAGCAGCAATCCCTGCACCCATGACCCCGTCTCATCCACTATACCATATGgCCCCTTTCCTTGCAAAGCCGTGAACAAGATCCTGTGGAGGACGACAGAATCAGGAGCTCCTCTAGTGTTATTCAGTGGCGGGATGCCCAGAGCCAGCTATGGAGACAGACACTGCCTCACCATCCTGCAGGACAGCAGCCACGTCACGCTGGACTTCACCTCGCGTGTCATCGACTTCTTCACTATTCACTGCACGGATACAGAGAAGGACTTTGACGAGCCTTCAGCACTGGTGGTTCTTCTGGAGGAGGAGCTGGTGGTGATTGATCTTCAGATGCCTGGATGGCCCACAGTCCCTGCTCCATATCTGGCTCCTCTGCACTCTTCCGCCATCACCTGCTCCTGCCACATCTCCAATGTGCCTCCCAAACTGTGGGAGCGAGTGATCAGTGCTGGCCAACAGCAGTGTCCGCTGCAGAACTATGAGAATTGGCCAATATGTGGAGGGAAAAACTTAGCGCCTGATCCAAAACAGAAGGAACTGCTGTTAACTGGtcatgAGGACGGAACAGTGCGTTTCTGGGATGCGTCAGGAGTGTCACTCAAACCTTTATACAAACTGAGCACGGCCTCCATCTTTCAGACAGACTGCGAGCACAACGACAGCCTGACACAAGCCGGAGAGGAGGAATGGCCTCCATTCAGAAAGGTGGGCTGCTTTGACCCATACAGTGATGACCCCAGACTTGGAATCCAGAAAATCAGCCTCTGTAAATACAGTGGAAAACTGGTGGTGGCTGGAACTGCTGGACAAGTTATAGTCATGGTTCTTGGTGATGAGAAGTCAGACCATATGATTGATGTGGCCACAGTGGACCTGCTCCAGGACAGAGAGGGCTTCACATGGAAGGGTCACGACCGGCTGCCTCCTAAATCGGGCTCAGTAGTGTTTGCTCCTGGATTCCAGCCGGTGGTCCTAGTTCAATGCCTGCCGCCCGCCGCCGTTACTGCAGTGACCCTGCATGCGGAGTGGAATCTCATTGCCTTTGGCACTAGTCATGGCTTTGGCCTTTTTGACTACCACCGGCGAAGTCCAGTTCTGGCGAGATGCACGCTGCACCCCAATGACTCTCTGGCCATGGAGGGGCCACTGTCCCGAGTGAAGTCCTTGAAGAAGTCCCTGCGCCAGTCCTTCAGGAGGATCCGCAAGAGCAGAGTCTCAGGAAAGAAGCGCGTCGTGGTCAACAGTCCCACCAGTAAAGTGCAAGAGGCGAACGCTCATTTGGCAGATCACGATGCTGAAGTGACACCTGTGCAGAGGAGGATTGAGCCCCGTTCAGCGGATGACTCTCTGTCGGGAGTGGTGCGATGCCTCTGTTTCGCTGACACCTTCCTTAGAGACGgaACACATCATGGTCCTACAATGTGGGCCGGCACAAACTCTGGTTCAGTGTACGCTTACGCTCTGGACGTCCCGTCACAGGAGAAGTTCTCTGAGCAGAGTGTGGAGGCCCTGCTGGGGAAGGAGATCCAGCTGATGCACAGAGCTCCAGTGGTGTCCATCGCTGTGCTGGACGGCCGAGGAAACCCGCTGCCAGAGCCTTATGAAGTGTCCAGAGATCTGGCCAAAGCCCCCGACATGCAGGGAAGCCACTCGGTTCTTATCGCTTCTGAGGAGCAGTTTAAGGTTTTCATGCTGCCAAAAGTAAGTGCGAAGACCAAGTTCAAGCTGACAGCTCATGAGGGCTGTCGGGTGCGTAAGGTGGCACTGGCGAACTTCACCAGCGTGAGCTCTGAAGATTACTCTGAGAATGCTCTGGTGTGCCTTACCAACATGGGCGACATCCACATGTTCAGTGTGCCGGCTCTCAGACCGCAAGTGCGTTATGACTGCGTCCGCAAGGAAGACATCAGTGGCATCGCTTCTTGTGTTTTCACCAAGACTGGACAAGGATTCTACTTGATTTCTCCATCGGAGTATGAGCGATTCTCTCTGTCGGCTCGTGTGATCACAGAGCCGCTGTGTGGAGTGGATGTAGAGCGACCTCACGATGTCTCTGCGCACAGtTCCAGCACGACGCTTCCACCGCAGGCTAATGGAACACACAAGTCACAAGCAGAGAGCAAGTCTGCTGAAACTGAAGATTTGTTGGAGGAAATGCGCAGTGTCTTGTCTTCTCCCATCCTGGATTCTCCAAACAGCAGTGCAGACATCACTCTGGACACCACTGGAGATCTGACTGTGGAGGACGTCAAAGACTTCTTAATGACTGTGGATGAAGCGGAGAATAACTTCAGGAACATAACTGAGGAGGACGGGAGATCTGCTGGAATCCTCATCAACTGA

Function

GO:

id name namespace
GO:0032878 regulation of establishment or maintenance of cell polarity biological_process
GO:0003407 neural retina development biological_process
GO:0050708 regulation of protein secretion biological_process
GO:0051294 establishment of spindle orientation biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0005886 plasma membrane cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0045159 myosin II binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-69 Predicted to enable GTPase activator activity and myosin II binding activity. Acts upstream of or within cell projection assembly; regulation of Notch signaling pathway; and sensory system development. Located in basolateral plasma membrane. Is expressed in central nervous system; eye; head; and retina. Orthologous to human LLGL1 (LLGL scribble cell polarity complex component 1).

Ensembl:

ensembl_id ENSDART00000003511

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051913 lncRNA downstream 23722 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00051912 lncRNA downstream 279191 39692358 ~ 39696058 (-) True XLOC_026652
TCONS_00053080 lncRNA downstream 411948 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051904 lncRNA downstream 520346 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00052480 lncRNA downstream 861702 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00053081 lncRNA upstream 125521 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051928 lncRNA upstream 196801 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053082 lncRNA upstream 341448 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051934 lncRNA upstream 341448 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00053083 lncRNA upstream 348441 40403056 ~ 40405034 (-) True XLOC_026666
TCONS_00051910 mRNA downstream 279183 39691525 ~ 39696066 (-) False XLOC_026652
TCONS_00051911 mRNA downstream 279393 39692233 ~ 39695856 (-) False XLOC_026652
TCONS_00051908 mRNA downstream 327228 39630930 ~ 39648021 (-) True XLOC_026650
TCONS_00051907 mRNA downstream 347837 39619571 ~ 39627412 (-) True XLOC_026649
TCONS_00051905 mRNA downstream 486610 39472342 ~ 39488639 (-) False XLOC_026647
TCONS_00051919 mRNA upstream 1870 40056485 ~ 40136743 (-) False XLOC_026656
TCONS_00051920 mRNA upstream 7409 40062024 ~ 40068350 (-) True XLOC_026656
TCONS_00051922 mRNA upstream 99204 40153819 ~ 40162867 (-) False XLOC_026658
TCONS_00051923 mRNA upstream 99626 40154241 ~ 40162843 (-) False XLOC_026658
TCONS_00051925 mRNA upstream 130638 40185253 ~ 40202607 (-) True XLOC_026660
TCONS_00051914 other downstream 17775 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051909 other downstream 325687 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 715572 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051892 other downstream 1056532 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051881 other downstream 2201449 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051921 other upstream 34070 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051924 other upstream 99679 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051938 other upstream 472264 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 472267 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051964 other upstream 1257407 41312022 ~ 41312143 (-) True XLOC_026680

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_04098044_04120141.mRNA True 4784 mRNA 0.47 18 CI01000046 4096231 ~ 4120352 (+)