RNA id: TCONS_00051912


Basic Information

Item Value
RNA id TCONS_00051912
length 740
lncRNA type retained_intron
GC content 0.44
exon number 6
gene id XLOC_026652
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39691525 ~ 39696066 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGTACTGAAAGCGTCCATAGCAGCCAGGGAGCTGTTGACAACGAGGAACCATTAAATGACAGATATTTAAGCACAGCGCGGATCGTTTGCTGTGATTTAAATGCTTTTCTGTCCGGTAATGGTGCGAAAATGACCTCTAACAATCCAGCTGTATTTCTCCTCATGGTTAATGGACAAATCGAATCAGCCGATGTGAGTTAACATCGATTTTTAGAGCTCGTGTTAATGTGTGTGCAAAGCCTGTAATTAATGAGGGTAAAGTAACTACTTACACACCGTATTTTGTTTGAAGTTTCCAGAATATGATGATCTATACTGCaagtattgttttgtttatggACACGACTGGGCGCCCACATCAGGTTTGGAAGAAGGAATTTCTCAAATAACATCAAAAGGTCGTCTGTCTCAGAGTTTGGTGTGGAATTTCCCATTGGACATCACATTTAAAAGCACTAATCCGTTTGGCTGGCCTCAGATTGTAGTGAGTGTGTATGGCCCTGACACATTTGGAAATGATGTTGTTAGAGGTTATGGAGCCGTGCACATCCCGTTCACACCTGGAAAACACACAAAGACCATTCCCATGTTTGTTCCAGAGTCTACGTCAAGACTGCAGAAGTTCACCAGCTGGCTGATGGGAAGGCGTCCAGAATTCACAGATCCCAAGGTTGTTGCTCAAGGAGAGGGAAGAGAAGTGACGAGGGTACGCTCTCAGGGTTTTGTGACTCTACAATT

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0036038 MKS complex cellular_component
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050522-467 Predicted to enable hedgehog receptor activity. Predicted to be involved in cilium assembly and smoothened signaling pathway. Predicted to act upstream of or within cell projection organization. Predicted to be located in centrosome; ciliary basal body; and ciliary transition zone. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 27 and Meckel syndrome. Orthologous to human B9D1 (B9 domain containing 1).

Ensembl:

ensembl_id ENSDART00000145303

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053080 lncRNA downstream 129057 39561784 ~ 39563301 (-) True XLOC_026648
TCONS_00051904 lncRNA downstream 237455 39371873 ~ 39454903 (-) True XLOC_026646
TCONS_00052480 lncRNA downstream 578811 39112314 ~ 39113547 (-) True XLOC_026637
TCONS_00053079 lncRNA downstream 716660 38974260 ~ 38975698 (-) True XLOC_026636
TCONS_00053078 lncRNA downstream 716744 38971435 ~ 38975614 (-) False XLOC_026636
TCONS_00051913 lncRNA upstream 249807 39945865 ~ 39951527 (-) True XLOC_026653
TCONS_00053081 lncRNA upstream 484078 40180136 ~ 40181654 (-) True XLOC_026659
TCONS_00051928 lncRNA upstream 555358 40251416 ~ 40251945 (-) True XLOC_026662
TCONS_00053082 lncRNA upstream 700005 40396063 ~ 40405249 (-) False XLOC_026666
TCONS_00051934 lncRNA upstream 700005 40396063 ~ 40405386 (-) False XLOC_026666
TCONS_00051908 mRNA downstream 44337 39630930 ~ 39648021 (-) True XLOC_026650
TCONS_00051907 mRNA downstream 64946 39619571 ~ 39627412 (-) True XLOC_026649
TCONS_00051905 mRNA downstream 203719 39472342 ~ 39488639 (-) False XLOC_026647
TCONS_00051906 mRNA downstream 203876 39473188 ~ 39488482 (-) True XLOC_026647
TCONS_00051903 mRNA downstream 329293 39313094 ~ 39363065 (-) True XLOC_026645
TCONS_00051915 mRNA upstream 274297 39970355 ~ 40051425 (-) False XLOC_026655
TCONS_00051916 mRNA upstream 279191 39975249 ~ 40054615 (-) False XLOC_026655
TCONS_00051917 mRNA upstream 303955 40000013 ~ 40054749 (-) False XLOC_026655
TCONS_00051918 mRNA upstream 304254 40000312 ~ 40054738 (-) True XLOC_026655
TCONS_00051919 mRNA upstream 360427 40056485 ~ 40136743 (-) False XLOC_026656
TCONS_00051909 other downstream 42796 39649445 ~ 39649562 (-) True XLOC_026651
TCONS_00051900 other downstream 432681 39238096 ~ 39259677 (-) False XLOC_026643
TCONS_00051892 other downstream 773641 38913378 ~ 38918717 (-) False XLOC_026635
TCONS_00051881 other downstream 1918558 37767285 ~ 37773800 (-) False XLOC_026629
TCONS_00051873 other downstream 1992407 37673648 ~ 37699951 (-) False XLOC_026627
TCONS_00051914 other upstream 261300 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051921 other upstream 392627 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051924 other upstream 458236 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051938 other upstream 830821 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051939 other upstream 830824 40526882 ~ 40529779 (-) False XLOC_026667

Expression Profile

//