XLOC_026645 (arhgap23a)


Basic Information

Item Value
gene id XLOC_026645
gene name arhgap23a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39313094 ~ 39363065 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051903
ATGGACACAATTTTTGTGAAGAATGTGAGGGAAAAAGGCCCCGCTCACCTGGCTGGCCTGtgtacagGAGACAGGCTGGTTAAAGTGAATGGGGAGAGCGTGCTGGGTAAGACGTACTCGCAGGTCATTGCACTGATTCAGAACAGTGAGAGTGTACTGGAGCTCTCCATTATGCCAAAGGATGAGGACGTGCTTCAGCTGGCATATTCCCATGATGCCTACCTAAGGGGGAACAATCCATATACAGGAAAGGCCCAAAATCTTCCTCCACCACCCCCTGTTCTCTACCCTCCTCGTACAAAATCACAGTCTCCTGCAGGGTTCAGCCCCTGCCCTCCTCCAGCTTCTTCACACATGGGGCAAAACCAGCTGGACAACTGGAGCCGCTGGCCCGGCTCTTCTGCTGGTCCCTCTCCACCCCTTGACAACCGGACTGTGGCCTCCAGCAATGTTGTCTGGGCAGCCGAGGGCAGGAATTGTGAGCCGGGTGGTGTTGGTCACAGTAGCCCTGCACACCGAACAGAGGAGATCCAGTATGGAATGACTGACAGAGGACAGCAGCCAACTGGACAAATGAGAGGACGCTCATACTCATCTTCTTCCTCCTCAGGAGGAATGATGAGCCCTTTGCATCATGGTCATCTTGCCAATCACAACATGGGTACTGCCATGGGGCACACTGGAGGTCGTAAGGGAAGCCCACCTTGGGCCAGCCCTTCTCAGCCAACATCAACACCTTCATCCAGCCGCAACGAACGAACCCAACAAGCCCTTTCCAACTGGTACTACAGCCAGGTCCCAGGCCGTGAGCGAGAACGAGAACGAGAGCGGGAGCGATCTAGTTCTCGCTCAATGCACCCACGCCACAGGAGTTTCTCACAAGACCGTCTGGGAGAGCTTGGGAAGGCCAGGCGTTCTCAACAAGCAGGTTTTCCCCATAGTGCATCGCAAGACACGTTGCTGCTGCTTCAGCAGAGTGCTGCAGCATATGCTGATCCTTACTGGAACCATGGAGACTGGCGGGGTGAGCATATGTATGGTCAGCACCCATCTGTGGTGGCCTATGGGCGAAAGTCCTCCGAAAATCTTCTAGCAAGCCGGTACGGACACTCGGGACGCTCACTGGAAAATCTCGACAGAGCTGTGGGGATACTCTCACCAAGGGTTGAAAGATCTGCTTGGGTTCAACAACCTCCAAATAGGACTGAAGTCTATGCAAGACATGCTGGGCATTTCGGCCAACATATAGAGTCACCCCACCAAATGCACCACACACCCCAACACCACCAGAATCTCACACATGCAACACACCAACACTCATCTCAAATCCCACAACCTCAGCAGGCAGCTCCAATGGCAAGACGTTTGCCTTCTTGCCAGAGTCTAGATGAGGAGCCGATTGGCTATCGTAGCTACAGTCCCTCATTCAATAGGAAGACTGGCCGTATCTTGCAGCAGGCCCAGTCATTTAGAGATCCCTCTTACACAGGTCCACACCTTTGGACTCCAACATCCAAAACCAGTCCCCCAGAGGGGCATCCACCCTCAGCCACTGCTTCCCCAGCCCCACCAACCACTTCCTCTTCAACTACGATTTCCACACCATCTGAAGGACAAGACAGAACTTACCGACCCACTAATCATGACAGAGGGGCAGGGGAAGCGACAAGTGAAGCCCAGACACAGGAAGTGGTTCTGAGGCAGAAACCACCTACCGGCCGACGAGGTGCAAACGCCCTTCGACACCCACATTATGCAATAGCACTTGACTCCAGTGACCCTCTACTCTTTACCACTGACCCTACGGAGCCCACTGCCAAGGCAGAAAGTGCTATTTCTCATCGCCGCACAGATGTTAACCTTCCTCCACTATCTATTGAGGATGACTCCCTTGCATCAATTCCATTCATCGGTGATCCTAAATCTAATCGTCGCTCCTCGTACCTGTTGGCCATCACCACTGAACGCTCCAAGTCATGTGATGAGGGGCTTAACGCATATAGAGAAGAGGGCCGGGTCTTCTCGAGGCTTCCAAAAAGAGTCAAGAGCTTCTTTACTGAAGGGTCTCTGGACAGTCTGGGTGCTGCTGAAGAGGCTCGCTCTAAACGACACTCTACCTCTGAGCTGGGCAACATCAGCTACAGTGACGTGAAGAGAGAAGGCTGGCTCCACTTCAAACAGATCCACACGGAGAAGGGCAAGAAGGTTGGCAGTGCAATCTGGCCATGGAGACGGGTGTTCTCTGTGCTTAGGACCCATTCTCTGTTTCTTTATAAAGACAAGCGAGAGGCAGTGCTTAAAGGGGCGCAATTAGGGGGCGGGGCTGAAGACGAGCAGCCAATCAGCATCCGGGGCTGCCTTGTGGATATAGCATACAGTGAAACGAAGCGCAAGCACGCGCTGAGATTGACCACGCAGGACTTCTGCGAGTACCTGCTGCAGGCGGAGGACAGAGAGGACATGCTGGAGTGGATCCGAGTCATCAGGGACAACAGCAAGACCGACAACGAGGAATTGGGTTTCTCACGACAAGCTCTCATCAATAAAAAGCTTAACGACTACAGGAAGCAAAGTCCAACGGGTAACAAACCAGACTCCTCACCCAGAGTGCATCGAATGACCTTCCTCCTCAGCAAGCCAGACAACAGCGCACCTCCACGCTCCCCAAAACACGAGGCCAAAGATGAGAGCAGCCCCCCAAAATCTCCCTGGGGTATAAACATAATGAAGAAGAGCAAGAAGGCCGGTCCTAAAGCTTTTGGCGTCCGTCTAGAGGACTGCCAGCCTGCAGTAAACAACAAGTTCATTCCTCAGATTGTGGAGATCTGCTGTGGGCTGGTGGAGGACATGGGTCTGGAGTATACAGGGATCTACAGAGTGCCAGGAAACAATGCTGTAGTCTCCAGTCTGCAGGAGCAGCTCAACAAAGGAGTAGACATTAACATCACTGAGGAGAAATGGCAGGACCTGAATGTGGTGAGCAGCCTGCTGAAGTCCTTCTTTCGTAAACTCCCTGAACCCCTCTTCACTGATGataaatataatgACTTTATCGACGCCAATCGGATGGAGAACGCCAGCGATAGGCTGAGGACAATGAAGAAATTGATTCGGGACCTACCAGATCATTACTTTCACACTCTGAAATTTTTAGTTGGACACCTAAAGACGGTGGCTGACCACTCTGAGAAAAACAAAATGGAGCCGCGTAATTTGGCTCTGGTGTTTGGCCCCACTCTTGTTCGAACTTCAGAGGACAACATGACAGACATGGTCACCCACATGCCAGACCGCTACAAGATTGTGGAGACACTCATTCAGCATTACACCTGGTTTTTCTGCGAAGAACAGGATAAGGATgaaaagACCCCAGTGGACACAGAGGATGTCCAGCCTGCCCCAAACATTGATCATCTGCTCTCCAACATTGGCCGCACAGGCATGCTGGGTGAGGCTTCAGACTCAACCAACAGTGATTCTGCAAAATCTAAGGGGTCATGGGGATCAAAACGTGACTTTACTGCCAAGGATATCCTTACATTATCAATTATGTCGGCTGTGACCCGCAAACGGCGGAAGCGGCACAACGGCCGTCTCCTCGGCAGCAGCACAGACGACGATTCTGAGCATGAACCCATTAAATCCTGCATCTCCGAGAAAGACGATCTGCAAGAGATGGGGCAGGTTGCATCCTTCTGTGCCCCACGAGCAGAGGGAGAGGAGGATGACGATGAAGAGGAGgaagatgatgaagaggaggaggagggggctGAGAGACAGAAGGCACAAGAGCAGAAGGAAACAGTAGTCCCCAGCATTTCCTCAACAGAGGAAGTGACATCAACAGTGCTGCTGAGCGAAGAGGAAGAGCAGAAGTCTGAAGTGAAAGGAGGACGCAGCTGGAGATTAGATGATGCTCGGTCTATTGTGTCAGGCTACTCTACTCTGTCCACTTTGGGGCGGAGCTTAGCTTCAGAGGGGCGGGGCGAGGATGCAGATGATGAGCATAGTGAACTAGTGAGTGAAACTGATAATGAAAGCGGGTTTGCCTCACGCTCCCTCACCCAAGAAAGGCCAGAAAAACCAAACCGTTCCAACCAGAACTCTCATGCGTCTCCTGAACCAACCGCACCACAGAGTTTCCTCTATGCGCACTGCAAATCACCTACACCCTCTGGCTCCGCCACTGCTCCATCTCCCCCTTCACAACACATCACAACCAACCCAGAGGACAGCGCAGCACGCTCGTCTACTCCCTCAACCTCCTCTTACTCCTCATCCGCCTCACAACGGCTCCACAACCGCTCTTTCAACTCCCACCGCCTCATACAGTGCGACACCCTTGCACGCCGTCGGACAAAGGCGGACAAAGCCAAAGCTCCCTCAGTGGACCTTTCCGAACTCTCGAGCTCCTCCGCCGCAGAGGAGGACCGCCAGTCAGGTGCCAATCAAATCCCTGACTCCTCTCCGTCTCCTTCTTCAAAAGCCAAAGGGTTTAGCATAAGAAACGAGTGTACGCCAATATCCATGGTTGGTCCCGGAAGTAAGGGGTGTGTGTTGTCCCCCGGGCAAGGATCCCTGGCGGATCAGGTACGTGCTCGTCTAATGGGCTCGGCGGATGACCTGTGCAGCGTTGGCCTGAGAAAGCAGCTCTCGCCGGAGACGCGCCGGAAGAGACGCGCTTGGAGGAGACACACAGTGGTCGTGTCCCCTACGGATTGTTCAGACAAAAAGCCAACGGTCCAAAGCACCAAACCTCTAGCTTCACCCTCCCCTGTTGAAAAGCAGGATGTCAGAGAGTCCCACCCAGAGTGCTCAGAAACTGAAGCCCCTACTGCACGTCGGGCCGTGCCTACCTCGCGCTTTCGTGATTTCTTGTAGCAGTGGTGGTGTGTACAGGCTAGTGAACCAAGAGAGTTGGATTTGGGTTGTGTTGTAGCTGCATACTCGGTATGTTCAAAGTGAGTTTACACTAACAGCGATTCACACTTGCTTTCCACACTTTTATCTTAAGGCATAACCCCAGGTTATCATTGTTTTAAACATTGCTTTCTTACAGAGCAAGTTACTTTTCACACTTGTAATTTAGAAGCAAGGTAACTTCTTTTAACCCAGGGTTATGAAACTCATCCTGCAGGCACAGAACGTCAACATGACCTCATATTGATGTTGTAGCCCAACGTACCCCAACGTCAGGCTtttgtcaatgtccaacctaaaatcataTCAGCATCTAATCAAATTacaccttgatgttgtgtggatgttaccaatataacatctatcagacgttgtattatggtcactttccaaaacaacttaaaatcaaccaaatatcaacgtaatctGACAGATCGTTATTTTACGTCAAAAATAAAATTGtctttagatgctggctagacatcaagttttggtcacctgacgtcacaacctaaatctaacccaataataacatcttatgatgttgtgtgcctgctgggcagttACAGTAAAAGGTTTGGCATTTCAGTGCGTGTCTCCTTTTATCATCTAATAGTTTAACTTAAAACTTTAACTACaatcaacaataaataatatgagCATGGAAGTACCGACCACATTCTGTACTTGTCCAATCAATGACACTTACAcagcaaatatgcaaataaggatGATAACCAAAGGGTTTAGAATTGTAGAGTGTGAAATATCAGAGTAGGAatacaaattattcattcatcaaGTCAAGTCAAATTGGCTTTATTGTCTTTTCAACAATATACAGTGGAGTACACAGTGAAACGAAACATTGCTTCTCCAGCACCAAGGTGCTACATCAAACAACATAAATTGACAACATAATTTAGGACTGTACATTACTATAAAAGTTTAGAgattgaaataaaataagatattaaagtaaattttaaaaagtaagaaaattGGAAGCTGGAAACTTGAAACTGTAGTGGTCTAATGCTAATGTTGTAATCCATTTCCATGAATTATGCTAAGGTAAGCTAAAAGTCCTCTCACCAGactcagagatcagctgaatgggtttaaaatattgtaaaactcaactgtttaactgtaacTCTGAGTTTTCCTTTAACAACAATGAACtagggttaaagggatagttcacccaaaaatgaaaattctgtcatcatttactcaacccttCACGTTCAAAACCAAACAAGCTGAAATTCAAATGAAACTGCAGTAACTGTTTTCAGACCTGTGGATTTTTTGCTTTGGTTAATGCTTGATTTTCATAATTGTATGGAAAATGACCACCTTCATTTGGTTTGTTTCACTTTCATGAACTAAAATGAATTTACTCTTTTAAGAGTGCATCTGATTATTCCTGAAATTCTGCTCATATGCATTCTTATAATGTACTTCAACATTTAAACATCAAGAGGTGCATTTTGATTTAACTAATGCAATCATTTGTATGCTTGACATTTGCAGTACTCGTGTAACCCATATTCTTAAACAAAACCATCTAAGTGTAACGGAGGTCAGCTAGTATAGTGCTGTGCGggaaacctcactcctctaaacccgaaaaggtgctctagtggTGATGGATGCTATGGTCTATAGCCTACTTGCTAgtgcaaccaactcccatgcggagagTCGCCGGATTGATCCCAgcttgggtggtgtaggaccgacAGGGTTACATAAGGGAGAAAATGCACCAATTTCTCTAAATGAACCAGTTTTGACGTGTCATCTGTAATAAGGAATAGGATGGAAATGGACAAACTTCTGCCTCAATTCAAAGGTCATCTAAAGAAATTAGTACTTTGAATGAGCTTTTTACCCCCAGAATGTCTTTAGGTGTCATTTTAGCAGCATGTTCCgcaataatttagttttaaacttcaattttagcttatttatttattgtcactgCAGTACATTGCTAATCATTTCCAAAAATGAGTACTCTTATTTATGCAAATGAGTGACTAGCATCATCCTGTCCTCCGGTGAATCTGCATAGATGAATCTCTTTGTCTCTGTGAATCGCTGTTAGTGTGAACGGTCCTTTAGTTTGCCGTGTTGAGTACAAAATGCAAACTCTATTATACTATACTTTACTACACTGTACTATACAATGTAAAGCCCTTGGTCAAGTCGAATTTACATCACACTTACTTACTGTTGCCAAAGTTTTTTCTTCCTTTCACATTTCCTTATTTTTTTAATCCTGGCAAGTCACACGACAACATTCAGCTCTTCAAAATGACTGCCAAGACCCTCACGACGTACATGCCATGGAGTGCTTTTATGTTTTCAAGTCCCTGATGAACCGATAATGTGCCGGTACAGTATTGGTTAAACAGTGTTATCAAACGAGAGCAGTGTTGATAGTGACGGTTTTACTAGATTTAACACAGGCCGTTGAGCTCAGAGCAGCTGCGTAACTCTACCAGTAACTCGCTACATTAAGAAACATAAGACGCAGTGTGTGGCGTTCACCTTCCCACATGTTCATCTACACTGAGTGACGGCTCATTGGTGAAATCACTTCAGATGAGCGTGTATGTGTGTCTGAAATTGTCTGTGTAAACCGTATGTGgtcgagtatgtgtgtgtgtcaaatgattttgtaacatttgtacaAAGCCTTGCTTAAGTTAACCTTgtaaatacacatatattatattgtcatttcctttttttttctcttttattttagcttttatatGGTTTACAAAAGTGCGCTTGGGTGCACGGTCATTTCTTTCAAGATGTTACTTGaaacgttgttgtttttttcccttaatatttttcgtttgtttgttttatacacagtatatattatacatatattttgtaTGAATATAATAAGTACTTTTATTTGGAAATCTTGGGGTGTACCTGTTTTAACTCCACTAGACTGTTTTCCCTGTTAATGGCCTTTCTCTGTGACTTACAAATACTATGCAGAAATCTATTCACCTCAATGCAAAGAACAGAGATCTAACCTGCAAAGAGTGTCTGTCACAAGCTATAATAAATTCTTATTGCAGAGCGTA

Function

symbol description
arhgap23a Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP23 (Rho GTPase activating protein 23).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121019-1 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP23 (Rho GTPase activating protein 23).

Ensembl:

ensembl_id ENSDARG00000052950

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051903 True 8042 mRNA 0.47 19 39313094 39363065

Neighbor

gene id symbol gene type direction distance location
XLOC_026644 plcd3a coding downstream 7803 39260082 ~ 39305291 (-)
XLOC_026643 nmt1a coding downstream 53175 39238096 ~ 39259919 (-)
XLOC_026642 si:ch211-232p21.6 coding downstream 104380 39200082 ~ 39208714 (-)
XLOC_026641 RETSAT coding downstream 114981 39191815 ~ 39198113 (-)
XLOC_026640 retsat coding downstream 122777 39181387 ~ 39190317 (-)
XLOC_026646 CU464118.1 coding upstream 8808 39371873 ~ 39454903 (-)
XLOC_026647 zgc:100868 coding upstream 109277 39472342 ~ 39488639 (-)
XLOC_026648 NA coding upstream 198719 39561784 ~ 39563301 (-)
XLOC_026649 si:dkey-27o4.1 coding upstream 256506 39619571 ~ 39627412 (-)
XLOC_026650 grapa coding upstream 267865 39630930 ~ 39648021 (-)
XLOC_026637 NA non-coding downstream 199547 39112314 ~ 39113547 (-)
XLOC_026636 NA non-coding downstream 337396 38971435 ~ 38975698 (-)
XLOC_026631 BX936420.1 non-coding downstream 783678 38525979 ~ 38529416 (-)
XLOC_026626 NA non-coding downstream 1663705 37634100 ~ 37649389 (-)
XLOC_026625 NA non-coding downstream 1728287 37581522 ~ 37584807 (-)
XLOC_026651 BX322795.1 non-coding upstream 286380 39649445 ~ 39649562 (-)
XLOC_026653 BX649356.2 non-coding upstream 582800 39945865 ~ 39951527 (-)
XLOC_026654 BX649356.3 non-coding upstream 594293 39957358 ~ 39957474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_04478947_04510165 ARHGAP23A coding CI01000046 null 4478947 ~ 4511125 (+)
bowfin (Amia calva) AMCG00016937 NA coding CM030122.1 CM030122.1 35273923 ~ 35312713 (-)