CI01000046_04478947_04510165 (ARHGAP23A)


Basic Information

Item Value
gene id CI01000046_04478947_04510165
gene name ARHGAP23A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 4478947 ~ 4511125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_04478947_04510165.mRNA
ATGCGGGACTGTTTAAAAAGGAGCGTCACCATTTGTCTATATGTGTGTGATCATGCGTGCAAGTTGGCAAAGGGGCGGAGAGATGGGATCTCTTCATCCAGTGAGAACCCTCGGCCGGTGGTCAGGAGCGGGGCAGATGGGCTGGGCATGTCCTGGCAGGGTCCACGTACACTGGTGCTCCATAAGAACTCTCAGGGCTTTGGCTTCACGCTACGTCACTTCATCGTTTACCCGCCAGAGTCTGCCCTGCACACCAGTTTCAAGTCAAAAGGCCTATTTTGTGTCACTCCGAGCTGGGCTGGGCCGTACCAGGTCTGCTGGGACAATGTGTTCTGGTCCATTCTGTTCTTCACTGTTCCCAGTGTCCACATGATGCACAGTGAATATTATGAATACTATATCATTGCCAGCACAGACGGAAAGATTAATGTCATTGCGGCTCTTCTTGCGGAGGATGAAGAGAACGGGAATGGAAAGGGGCTCCATCGGAGTTGTCTGGAGCCCATGGACACCATCTTCGTTAAGAATGTGAGGGAGAAAGGCCCCGCCCACCAGGCTGGCTTGTGTACAGGAGACAGGCTGGTTAAAGTGAATGGAGAGAGTGTGCTGGGTAAGACGTACTCACAAGTCATTGCACTGATTCAGAACAGTGAGAGTGTACTGGAGCTCTCCATCATGCCAAAGGATGAGGACGTGCTGCAGCTGGCATATTCCCATGATGCCTACCTAAGAGGGAACAATCCATATACAGGAAAGGCCCAAAATCTTCCTCCTCCACCCCCTGTCCTCTATCCTCCACGTACAAAATCCCAGCCTTCTGCGGGGTACTCCCCCTGCCCTGCCCCAGCTTCCTCACACATGGGACAAAACCAACTGGATAACTGGAGCCGCTGGCCCGGCTCTTCCTCTGGTCCTTCTCCGCCACTTGACAACCGGACAGTCACTTCCAGCAACGCTGTCTGGGCAGCTGAGGGTAGAAGCTGTGAGCCAGGAGGTGTTAGTCACAGTAGCCCTGCACACCGAACTGAGGAGATCCAGTATGGAATGACTGACAGGGGACAACAAGCAATCGGACAAATGAGAGGACGCTCAAACTCATCTTCTTCATCTTCAGGAGGAATTATGAGCCCATTGCATCATGCTCATCTTGCCAACCACAATGTGGGTACTGCCATGGGGCACACTAGTGGCCGCAAGGGAAGCCCACCATGGGCCAGCCCTTCTCAGTCAACATCAACACCCCCATCCAGCCGCAGTGAACACACCCAACAAGCCCTTTCCAACTGGTACTACAGCCAGGTACCAGGCCGTGAGCGAGAACGGGAACGATCTAGTTCTCGCTCCATGCTCCCACGCCATAGGAGTTTCTCACAGGACCGCCTGGGTGAGATTGGGAGGGCCAGGCGTTCGCAGCAAGCAGGCTTTCCCCACAGTGCATCACAAGACACATTGCTACTGCTTCAGCAGAGCTCTGCAGCATACGCTGATCCCTACTGGAACCAGGGAGACTGGCATGAAGAGCATGCATATGGACAGCACCCATCTGCAGTGGGCTATGGGCGCAAGTCCCCCGGAAACCTTCTTGCAAGCCGGTACGGACACACGGGACGTTCACTGGAAACTCTCGACAGAGCTGTGGGGATACTCCCACCACGATTTCACCACCAGGTCCAGCAGCCCCCAAACAGAACTGAAGGATATCCAAGACGTGGTGGACATTGTGGGCAACACGCAGAGTCACACCACCAAATTCAGCCCCACCAAACACAACACCACACACCCCAACACCATCAACACACACCTCAGTATCAAAACCTCACACATGCAGCACACCAATACTCATCTCAGACTCCACAACCACAGCAGGCAGCTCCACAGGCAAGACGCTTGCCTTCTTGCCAGAGTCTAGATGAGGAGCCGATTGGCTACCGTAGCTACAGCCCTTCTTTCAACCGCAAGACTGGCCGTATCCTGCAGCAGGCCCAGTCATTTAGAGACCCCTCTTATACAGGTCCACCCCTATGGAGTCCTGCACCCAAAACCAGTCCCCCAGAGGGGCTTCCACCCTCGGCCTCTCCTTCCCCAGCCCCACCAACCACCTCCTCTAAAACTGCTATTCCCACACCCCCTGAAGGACAAGACAGAACTTACCGACCCACTAATCATGACAGAGGGGCAGGGGAAGCAACAGGTGAAGCCCAGACACAGGAAGTAGTTCTGAGGCAGAAACCACCCACCGGCCGCAGGGGTGCGAACGCCCTTCGACATCCACATTACGCCATAGCACTGGACTCCAGTGACCCTCTACTCTTTACCTCTGACCCTTTGGAGCCCCCTGCCAAAGCAGAAAGTGCTATTTCTCATCGCCGCACGAATGGCAACTTACCACCACTATCCATAGAGGATGACTCCCTCGCGTCGATTCCTTTTATAGGTGATGCCAAGTCTAATCGTCGATCCTCTTACCTGCTGGCCATCACCACTGAACGCTCCAAGTCATGTGATGAGGGGCTTAACGCATATAGAGAAGAGGGACGGGTCTTCTCGAGGCTTCCAAAAAGAGTCAAGAGCTTCTTTACTGAAGGGTCTCTGGACAGTCTGGGTGCTGCTGAAGAGGCTCGCTCTAAACGACACTCTACCTCGGAGCTGGGCAGCATCAGCTACAGTGACGTGAGGAGGGAAGGCTGGCTCCACTTCAAACAGATCCACACAGAGAAGGGCAAGAAGGTGGGTAGTGCCATCTGGCCTTGGAGGCGGGTGTTCTCCGTGCTTCGGTCCCATTCCCTGTTTCTCTACAAAGACAAGCGAGAGGCAGTTCTCAAAGGGGCGGTGCTGGGAGGCGGGGCCGAAGATGAACAGCCAATCAGCATCCGGGGCTGCCTTGTGGACATAGCCTACAGTGAAACGAAGCGCAAGCACGCGCTGAGGTTGACCACGCAGGACTTCTGTGAATACCTGCTACAGGCGGAGGACAGAGAGGATATGCTGGAGTGGATCAAAGTCATCAGAGAGAACAGCAAGACTGACAATGAGGAATTGGGTTTCTCACGACAGGCTCTCATAAGTAAGAAACTTAATGACTACAGGAAACAAAGTCCAACAGGCAATAAACCAGACTCCTCACCCAGAGTGCATCGAATGACATTTCTGCTCAGTAAGCAAGACAACAGCGCACCTCCACGTTCCCCAAAACACGAGGCCAAAGAGGAGAGCAGCCCCCCAAAATCACCTTGGGGCATAAATATAATGAAGAAAGCTAAGAAGGCAGGTCCTAAAGCCTTTGGTGTCCGTCTAGAGGACTGCCAGCCTGCTACCAACAACAAGTTCATTCCCCAGATTGTGGAGATCTGCTGTGGGCTGGTGGAGGAAATGGGTCTGGAGTATACAGGGATCTATAGAGTGCCGGGAAACAATGCCGTAGTGTCCACTCTGCAGGAGCAGCTCAACAAAGGAGTAGACATCAACATCGCTGAGGAGAGATGGCAAGACCTGAATGTGGTTAGCAGCCTGCTGAAGTCCTTCTTTCGTAAACTCCCAGAACCCCTCTTCACTGATGACAAATACAATGACTTTATTGAGGCCAATCGGATGGAGAATGCCAGTGATAGGCTAAGGACAATGAAAAAACTGATCCGTGATCTACCAGATTATTACTTCCACACTCTAAAATTTCTAATTGGACACCTAAAGACTGTGGCAGACCACTCTGAAAAGAACAAGATGGAGCCGCGTAATTTGGCGCTGGTGTTTGGCCCCACTCTTGTCCGGACCTCAGAGGACAACATGACAGACATGGTCACCCACATGCCTGACCGCTACAAAATTGTGGAGACACTCATTCAGCACTATGTCTGGTTTTTCATTGAAGAACACGAAAAGGATGAAAAGACACCAGTGGACACAGAGGATGTCCAGCCCGCCCCAAACATAGATCATCTCCTCTCTAACATTGGCCGGACAGGCCTGATGGGGGAGGCGTCAGTGGAAGCGCCACCAGCGGTTCTGCTGAGCGAGGAGGAGGAACAAAGGTCTGAAGTGAAAGGTCGCGGCTGGCGAGGAGATGATGCACGGTCTATTGTGTCGGGCTACTCTACTCTGTCCACTCTGGGGCGGAGCTTAGCGTCAGAGGGGCGGGGCGAAGATGCAGATGATGAGCACAGTGAACTGGTGAGCGAAACTGATAACGAAAGCGGATTCGCCTCACGCTCCCTCACCCAAGAGAGGCCGGAAAAACCAACCCGTTCCAGCCAAAACTCACAAGCCTCACCCGATCCGACCGCGCCACGCAGTTTCCTCTATGCGCACTGCAAATCACAGATGCCCTCTGCTTCCTCCGGCTCCTCCCTCGCTCCTCCTTCTCTCCACATCACTACCAACCCTGAAGACCAAGCGAACGACAGCGCAGCACGTTCGTCTACTCCCTCATCTTCCTCTTACTCATCATCCGCCTCCCAGCGCCTCCACAGCCGCCACTCTTTTAACTCCCACCGCCTTATACAGTGCGACACCCTGGCACGGCGTCGGCTAAAGTCAGATAAACCCAAAGCGCCCTCGGTGGACCTTTCAGAAGTTTCCAGCTCCTCCGCCACGGAGGGAGATCGCCGGTCAGGTGCGAATCAAATCCCTAATTCCTCTCCATCTCCTTCTCCAAAAGCCAAATCCTCCAAAGAGGTTAGCGTGAGAAAAGAGTATATGCCAACATCCATAGCCGTTCCCGGAATTAAGAGCTGCTCGTTGTCCTCTGGACAGGGTTCCCTGGCGGATCAGGTACGGGCTCGCCTGATGGGCTCAGCGGACGACCTGCGCAGTGTCGGCCTGAGGAAGCAGCTCTCGCCGGAGACGCGCAGGAAGAGACGTGCATGGAGGAGGCACACCGTGGTAGTCTCCCCTACAGATTGTTCAGACAAAAAAACACCGGCGCTACCCCCCAAACCGCTAGATTCACCCTCCCCTGTTGAAAAGCCGGACGTTAGAGAGTCCCACCCAGAGTGCTCAGAGACTGAAGCCCCTACTGCACGTCGGGCCCTGCCTACCTCGCGCTTTCGTGATTTCTTGTAGCAGTGATGGTGTGTACAGGCTAGTGAACCAAGAGAGTTGGATTTGGGTTGTGCTGTAGCTGTGTCCACAGTATGTTCGTTTTGAGTTCACACTGACAGCGATTATATCGTTGTAGAACACTTTTGGTCGGTAGACGTTCATACTCAGTGCAGTGTCAAACTGTGCCAGGTGGAAAATCATGCGAGTGTCATTGTGCACCATTCAGAATTGAGCACCAGTTCAGTTTTTGAATTTAATTGAGGTAGCAAACAGGATGCCAAGTTGAAATTTGGAATTACAATGAGCTGAAATTCAAACAATAAGGGCATTTTCAGACCTGTAGATTGTTTGCTTTGTTCAGAAACAGGGATTTACAATGTTACATTGTTGCATTTTCTCCTTGGTTTGCTTTTTACATGGAAAAATTGTATGCAATTTAATATTTTTATGTTGATGCAAGTCACATTTGCACCTGTTTTGAAGAAGAGCAATGACGTTTTAAAATGAAGAGGTGCTCTTAGCTGTGATAAGAAATAGACACTGCTGATTTTTATGCAACACATTTTCTATTTCATATTATGATACAACTTGGATTGTTGGTCTGTTGGGTCAGATTGCTTTCTCAACACAAGCAAACCGCTTCAGAGTTTGTTTTGAATCAGAGACCACCTCCTTAAGGTGATCTTGGACTGATTATTTTGGTCCAGCTCCGACTGCGTTTGCAGTGTTTAAATATGCATAAACGAACCTAAACTAGGGAGAAAAAATTGTGCCAGGTTCCGAAACAAACGCTCCAAATGAGCCAGGTGTGAAAACGCCCTAATTGCCATTTGTAACAAGAAATGGAAGAGTTATAAAGACAAACTTCTGCCTCATTTGAAATGTGCTTATTTTTATATGAATTTCTCAAGTGAAGTTTCATTTTATGGACCAAGGAGGAAAAACACTTCATTTCCCGGAATGTCATTACCTGTTTTTTGA

Function

symbol description
arhgap23a Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Orthologous to human ARHGAP23 (Rho GTPase activating protein 23).

GO:

id name namespace
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K20315 ARHGAP21_23; Rho GTPase-activating protein 21/23

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_04478947_04510165.mRNA True 6018 mRNA 0.51 23 4478947 4511125

Neighbor

gene id symbol gene type direction distance location
CI01000046_04319601_04326459 NA coding upstream 152415 4319601 ~ 4326532 (+)
CI01000046_04308380_04317709 GRAP, GRAPA coding upstream 160977 4308380 ~ 4317970 (+)
CI01000046_04274035_04275654 B9D1 coding upstream 203185 4273852 ~ 4275762 (+)
CI01000046_04098044_04120141 LLGL1 coding upstream 358595 4096231 ~ 4120352 (+)
CI01000046_04081845_04083512 NA coding upstream 395412 4081721 ~ 4083535 (+)
CI01000046_04532653_04542785 PLCD3, PLCD3A coding downstream 21528 4532653 ~ 4542785 (+)
CI01000046_04545960_04557955 NMT1A, NMT1 coding downstream 34835 4545960 ~ 4558453 (+)
CI01000046_04563154_04565515 NA coding downstream 51962 4563087 ~ 4565727 (+)
CI01000046_04579543_04581492 NA coding downstream 68156 4579281 ~ 4581540 (+)
CI01000046_04584213_04592141 NA coding downstream 72537 4583662 ~ 4592290 (+)
G196889 NA non-coding upstream 35065 4437237 ~ 4443882 (+)
G197140 NA non-coding upstream 42695 4435878 ~ 4436252 (+)
G197136 NA non-coding upstream 56988 4421736 ~ 4421959 (+)
G197135 NA non-coding upstream 65598 4412862 ~ 4413349 (+)
G197130 NA non-coding upstream 81117 4397518 ~ 4397830 (+)
G197153 NA non-coding downstream 130056 4641181 ~ 4643913 (+)
G197158 NA non-coding downstream 137825 4648950 ~ 4708769 (+)
G197156 NA non-coding downstream 146882 4658007 ~ 4684792 (+)
G197169 NA non-coding downstream 211064 4722189 ~ 4736190 (+)
G197170 NA non-coding downstream 225139 4736264 ~ 4744725 (+)
G196869 NA other upstream 57260 4415530 ~ 4421687 (+)
G197121 NA other upstream 107517 4371011 ~ 4371430 (+)
G197055 NA other upstream 329167 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 533447 3943794 ~ 3945500 (+)
G196936 NA other upstream 1284676 3186995 ~ 3194271 (+)
G197352 NA other downstream 763257 5259318 ~ 5276453 (+)
G197528 NA other downstream 1214996 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 2308813 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026645 arhgap23a coding NC_007114.7 CM002887.2 39313094 ~ 39363065 (-)
bowfin (Amia calva) AMCG00016937 NA coding CM030122.1 CM030122.1 35273923 ~ 35312713 (-)