XLOC_026640 (retsat)


Basic Information

Item Value
gene id XLOC_026640
gene name retsat
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39181387 ~ 39190317 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051897
CTGCGTCACAGGAGGAGTCAACTGTGGTGTGAGGAAGTGTGTGTAAAGTATTCGGCACTGACAGCGCAAGAAAATAGCACGCTGCAACTTACAAAATGTGGTTCGCTGTCGTCGCAATTTTCTTGGCTTTAGTGGCCTTTTTGTATAGATATGTTGTGGGAAGTGGACCGAACCCTTTTGCGATCGACACACGAGAGCCCCTGAAGCCCATGGTGTTCGACCGAAAGCTGAAGAATAAAGTCCTGAAACAAGGTTTCTTGGCCAGTAGGGTTCCTGAGGATTTGGATGCAGTAGTGGTTGGCAGTGGGATTGGTGGACTGGCAATTGCTGTCCTGTTGGCCAAAGTGGGCAAGAAAGTTCTGGTTCTGGAGCAACATGACCGGGCTGGAGGATGCTGTCACACCTTTAAGGAGCAAGGCTTTGAGTTTGATGTTGGCATCCACTATATTGGGGAACTGTCGAATCACAAGCCGTTACGCTGTATTATTGACCAAATGACCAATGGGCAGCTGCAGTGGGATCCGCTGGAAAACCCCTTTGACAATGTGGTCATTGGTCCACCTGAAAACCGGCGCATATACCAAATCTACAGTGGCCGAAAACGCTACATGGACGAACTAAAGAAGTGCTTCCCAGGAGAGGAAAAGGCCATTGATGAATACGTGAGACTTTGCAAGGAAGTTGGACAAGGTGTATGGGTTATGGTCCTGCTGAAATTTCTCCCGACCCCTATTGCAAATTTCCTGGTGCGCACGGGTCTGGCCAATCGCTTGACTTCCTTCTCTCGATATGCGTCCCGCAGCCTAACGGATGTGGTGAATGAGCTTACACAGAATAAGGACCTGAGAGCCGTGCTCTCCTACATCTTTGGAACCTATGGTAAAATACCCAAAGAAGCAAGCTTTTCCATGCACAGTTTGATTGTCAACCACTATATGAATGGTGCTTGGTACCCAAAGGGTGGTGCTACTGAGATCGCCTACCACATGATCCCCATTATTGAGAAGGCAGGAGGTGCTGTGCTTGTTAGAGCACCTGTAAACCGCATTCTCCTCAATGATGCTAAAGAGGCTATTGGTGTGAGTGTTCTGAAAGGACAGGAGGAAGTGCATGTACGAGCTCCCATAGTGATTTCAGATGCTGGAATCTTTAATACTTATGAATATCTCCTGCCCAAAGATGTGCAGACTATGCCTGCAATTCAGAAACAGTTGAGTATGCTGCAGCATGGAGACAGTGGTCTCAGCATTTTCATTGGCCTGGATGGGACAAAAGAGGAGTTGGGCTTAAAAGCAGACAATTACTTTATCTACCCTGAGAACAATATAGACGAGCTGTTGGAGGATTATAGGAGCGGAAACAGGGAAGAATCTGCTAAAAAGAATCCTCTGATTTTTGTGGCCTCACCCTCTGCCAAAGACTCAACCTGGCCAGAAAGAACACCAGGTAAATCCACCCTGACTGTTGTTAGTTTTGCTAACTATGAATGGTTTGAAGAATGGAAAGATGACAAAGTGAAGAACAGAAGCACAGATTATAAGCAGTTGAAGGAGTTGTTCATCAATTACATATTAGAGGCAGTGACTGAGATCTATCCGAAGATCAAGGACAGGATTGAATATGTGGATGCAGGCACCCCAATCACTAATCAGCATTACATTGCCGCACCTAGGGGAGAGATTTATGGCGCTGATCATGGAATTCCTCGCTTCAGTGCTGAACTGAATGCCACCATTAGAGCACAGACACCCATTAAAAACCTCTACCTTACAGGTCAGGATCTGATGTTGTGTGGTTTTGCTGGAGCGTTGACAGGAGCTCTGACTTGCGGTTCTGTCATCCTGAACCGGAATCTACACCTAGAAGCCTTCAGTCTTGCCAAAAGAGTCCAAAATGGCAACAACAAGAAGAAAACATAAAGATCAGTATTACATAATCTTGATAGTCATTCATATCACGTATGGCTCTCGAGAAGGAGAACAAAGGGAGAACctgcattatttttaaagaaatgaaccACTGCCTAGTGCCTACAGTAACAATACACTGCAGAGCCTTACTGGTATAACACACAACTCTAATTTTTTATCTACTTCTTAAATCAAGGGAAATACGTTAGTTGATTCAATAAATGGACTTACTAAAATAATagaattatttttgtaaataaaaaagtgttgATTAAAAAATTCCAGTTTTCTTAAATCCAACTaacttttttaaatgcaattgaATATTTTTAAGCAAGCAGAAGTAATGCACTTGGtactgtgtgttttttgtttttaactaacTGAGCATGAACTAAAATGGTGTCTTTTGATTTGAATTATTGTGGCTCTACAGTGGTTCATATGTCTGTATTCAGGGAATTTCATGCAGATGTAAGATGAATGCAACTTCACATTTACATGTGTGCTTCCTTTTTAGGTTGCTGTGATTTTTTTCAGACTTGTACACTAAATGTGCTAATTCAATGGATGCTTGTGCATACCGAATAAACATTTTCACTTGAACAACAAA

Function

symbol description
retsat Predicted to enable all-trans-retinol 13,14-reductase activity. Predicted to be involved in retinol metabolic process. Located in membrane.

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0051786 all-trans-retinol 13,14-reductase activity molecular_function

KEGG:

id description
ko00830 Retinol metabolism

ZFIN:

id description
ZDB-GENE-050320-11 Enables all-trans-retinol 13,14-reductase activity. Predicted to be located in endoplasmic reticulum membrane. Is expressed in gut and liver. Orthologous to human RETSAT (retinol saturase).

Ensembl:

ensembl_id ENSDARG00000018600

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051897 True 2523 mRNA 0.43 11 39181387 39190317

Neighbor

gene id symbol gene type direction distance location
XLOC_026639 cdk21 coding downstream 1339 39175860 ~ 39180048 (-)
XLOC_026638 svilc coding downstream 9419 39112898 ~ 39171968 (-)
XLOC_026637 NA coding downstream 67840 39112314 ~ 39113547 (-)
XLOC_026636 NA coding downstream 205689 38971435 ~ 38975698 (-)
XLOC_026635 si:dkey-106c17.2 coding downstream 262670 38912557 ~ 38918717 (-)
XLOC_026641 RETSAT coding upstream 1498 39191815 ~ 39198113 (-)
XLOC_026642 si:ch211-232p21.6 coding upstream 9765 39200082 ~ 39208714 (-)
XLOC_026643 nmt1a coding upstream 47779 39238096 ~ 39259919 (-)
XLOC_026644 plcd3a coding upstream 69765 39260082 ~ 39305291 (-)
XLOC_026645 arhgap23a coding upstream 122777 39313094 ~ 39363065 (-)
XLOC_026631 BX936420.1 non-coding downstream 651971 38525979 ~ 38529416 (-)
XLOC_026626 NA non-coding downstream 1531998 37634100 ~ 37649389 (-)
XLOC_026625 NA non-coding downstream 1596580 37581522 ~ 37584807 (-)
XLOC_026646 CU464118.1 non-coding upstream 181556 39371873 ~ 39454903 (-)
XLOC_026648 NA non-coding upstream 371467 39561784 ~ 39563301 (-)
XLOC_026651 BX322795.1 non-coding upstream 459128 39649445 ~ 39649562 (-)
XLOC_026653 BX649356.2 non-coding upstream 755548 39945865 ~ 39951527 (-)
XLOC_026654 BX649356.3 non-coding upstream 767041 39957358 ~ 39957474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_04594068_04600391 RETSAT coding CI01000046 null 4593711 ~ 4600988 (+)