Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00051929 |
| length | 1858 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 12 |
| gene id | XLOC_026663 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 40260929 ~ 40276071 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:1904482 | cellular response to tetrahydrofolate | biological_process |
| GO:0019264 | glycine biosynthetic process from serine | biological_process |
| GO:0009113 | purine nucleobase biosynthetic process | biological_process |
| GO:0006730 | one-carbon metabolic process | biological_process |
| GO:0046653 | tetrahydrofolate metabolic process | biological_process |
| GO:0046655 | folic acid metabolic process | biological_process |
| GO:0051289 | protein homotetramerization | biological_process |
| GO:0006544 | glycine metabolic process | biological_process |
| GO:0006565 | L-serine catabolic process | biological_process |
| GO:0032259 | methylation | biological_process |
| GO:0035999 | tetrahydrofolate interconversion | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0050897 | cobalt ion binding | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0008168 | methyltransferase activity | molecular_function |
| GO:0000900 | translation repressor activity, mRNA regulatory element binding | molecular_function |
| GO:0030170 | pyridoxal phosphate binding | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0070905 | serine binding | molecular_function |
| GO:0016597 | amino acid binding | molecular_function |
| GO:0048027 | mRNA 5'-UTR binding | molecular_function |
| GO:0004372 | glycine hydroxymethyltransferase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1558 | Enables glycine hydroxymethyltransferase activity. Predicted to be involved in several processes, including L-serine metabolic process; folic acid-containing compound metabolic process; and protein homotetramerization. Predicted to act upstream of or within methylation. Located in cytosol and nucleus. Is expressed in several structures, including digestive system; immature eye; midbrain; neural tube; and oocyte. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human SHMT1 (serine hydroxymethyltransferase 1). |
| ensembl_id | ENSDART00000074737 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00051928 | lncRNA | downstream | 8984 | 40251416 ~ 40251945 (-) | True | XLOC_026662 |
| TCONS_00053081 | lncRNA | downstream | 79275 | 40180136 ~ 40181654 (-) | True | XLOC_026659 |
| TCONS_00051913 | lncRNA | downstream | 309402 | 39945865 ~ 39951527 (-) | True | XLOC_026653 |
| TCONS_00051912 | lncRNA | downstream | 564871 | 39692358 ~ 39696058 (-) | True | XLOC_026652 |
| TCONS_00053080 | lncRNA | downstream | 697628 | 39561784 ~ 39563301 (-) | True | XLOC_026648 |
| TCONS_00053082 | lncRNA | upstream | 119992 | 40396063 ~ 40405249 (-) | False | XLOC_026666 |
| TCONS_00051934 | lncRNA | upstream | 119992 | 40396063 ~ 40405386 (-) | False | XLOC_026666 |
| TCONS_00053083 | lncRNA | upstream | 126985 | 40403056 ~ 40405034 (-) | True | XLOC_026666 |
| TCONS_00051940 | lncRNA | upstream | 251214 | 40527285 ~ 40529775 (-) | False | XLOC_026667 |
| TCONS_00051941 | lncRNA | upstream | 251214 | 40527285 ~ 40529776 (-) | False | XLOC_026667 |
| TCONS_00051927 | mRNA | downstream | 6295 | 40235288 ~ 40254634 (-) | False | XLOC_026662 |
| TCONS_00051926 | mRNA | downstream | 28314 | 40206031 ~ 40232615 (-) | True | XLOC_026661 |
| TCONS_00051925 | mRNA | downstream | 58322 | 40185253 ~ 40202607 (-) | True | XLOC_026660 |
| TCONS_00051922 | mRNA | downstream | 98062 | 40153819 ~ 40162867 (-) | False | XLOC_026658 |
| TCONS_00051923 | mRNA | downstream | 98086 | 40154241 ~ 40162843 (-) | False | XLOC_026658 |
| TCONS_00051932 | mRNA | upstream | 1633 | 40277704 ~ 40284744 (-) | True | XLOC_026664 |
| TCONS_00051933 | mRNA | upstream | 20714 | 40296785 ~ 40301467 (-) | True | XLOC_026665 |
| TCONS_00051935 | mRNA | upstream | 250036 | 40526107 ~ 40529782 (-) | False | XLOC_026667 |
| TCONS_00051936 | mRNA | upstream | 250036 | 40526107 ~ 40529804 (-) | False | XLOC_026667 |
| TCONS_00051937 | mRNA | upstream | 250570 | 40526641 ~ 40528333 (-) | False | XLOC_026667 |
| TCONS_00051924 | other | downstream | 102242 | 40154294 ~ 40158687 (-) | True | XLOC_026658 |
| TCONS_00051921 | other | downstream | 172128 | 40088685 ~ 40088801 (-) | True | XLOC_026657 |
| TCONS_00051914 | other | downstream | 303455 | 39957358 ~ 39957474 (-) | True | XLOC_026654 |
| TCONS_00051909 | other | downstream | 611367 | 39649445 ~ 39649562 (-) | True | XLOC_026651 |
| TCONS_00051900 | other | downstream | 1001252 | 39238096 ~ 39259677 (-) | False | XLOC_026643 |
| TCONS_00051938 | other | upstream | 250808 | 40526879 ~ 40529778 (-) | False | XLOC_026667 |
| TCONS_00051939 | other | upstream | 250811 | 40526882 ~ 40529779 (-) | False | XLOC_026667 |
| TCONS_00051964 | other | upstream | 1035951 | 41312022 ~ 41312143 (-) | True | XLOC_026680 |
| TCONS_00051981 | other | upstream | 2590012 | 42866083 ~ 42866200 (-) | True | XLOC_026691 |
| TCONS_00052007 | other | upstream | 3805552 | 44081623 ~ 44094226 (-) | False | XLOC_026707 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000046_03959320_03963204.mRNA | True | 1577 | mRNA | 0.41 | 6 | CI01000046 | 3958548 ~ 3963204 (+) |
