RNA id: TCONS_00051958


Basic Information

Item Value
RNA id TCONS_00051958
length 1931
RNA type mRNA
GC content 0.39
exon number 14
gene id XLOC_026678
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40969242 ~ 40976582 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGTATATACTCTGAAATTACAATGAGGGACTTGTTTTTGAGCAACAGTACAGCAGGTTTGTTTAGTGAAGACACAGAAGTAGAACTCCGTGTTGAGCAGCGGTGGTGAGCATTAGTGTACATGAGCATTTGTTGTACACTAAAGAATACATTGATTTACAATGTTTGATCTCTCGTCTCTGTCTGTGACCTGGACCCTGGTGGTTCTGGTCATAACCCTCCTTTTAATTTACGGTGTTTGGCCACATGGATTTTTCAAAAAACTGGGAATTCCAGGACCAAGACCTTTGCCATTTGTTGGCACGGCTTTATCATACTCTAAAGGCATCTGTAATTTTGACATAGAATGTTCTAAGAAGTATGGAAAAGTATGGGGGATCTATGATGGAAGGCTTCCATTGCTACTTGTTACTGATCTGGAAATGATCAAAACGATTTTGGTGAAAGACTGTTATTCTACCTTCACTAACAGACGGaatatgAATCCAGATTTGGTTGGCCCTTTTGCTGATGGAATAACATTGGTTAAAGATGAGAGGTGGAGGCGAATCCGAAGTTCACTCTCTCCATATTTCACTAGTGGACGACTGAAGGAGatatttcccaTTGCTATGACACATGCTGATCGTTTTATTGAAAATATGGAAAAGAAAGACCCCAATCTACCACTTAAAATAAAAGATGTTGTGGCTCCATACAGTTTAGATGTTGTCGCCAGCTCCTCCTTCAGCGTTGACTTCGACTCCATAAACAACCCTGATGATCCGTTTGTTACCAGTATCAAAAGTTTTTTCAACATCAATCCACTCAGTCCTCTCTTTCTGCTTTTAGctttTTGTCCCTCTGCTGCAAATCTTTTGGCAAAAATGGGCATAAGTTTGTTTTCAAGATCAACTACAGATTTTTACTACAAGGCCCTGAGAAAGATTAAGGATGAGCACAATGAATCAAATggtCGAGTAGACTTCCTCAAGCTCATGATCCAGAATCAAATACCTGATGATCAAGTGAAGGACACTGCAAGTGAACAACCAGTAAAAGgaTTAACAGACCATGAGATTCTCTCCCAATCCTTCATTTTCATCTTGGGTGGTTATGAGACTACAAGCACGACTCTCTCTTACCTCCTCTATAATCTTGCTACTAATCCGGACTGCCTGGAAAAGCTGGTTGAGGAGATCGACAAAAACTTCCCTCTTGATATTCCCATCACATACGATGCATTGATGAGAATGGATTACTTGGAAATGGCCATACATGAATCAATGCGTGTCTTTCCTGCTGGTCCTCGCTTAGAAAGGGTCTGTAAAAAGACCGTAGAGATCAACGGCATTACCATACCAAAAAACACACTGGTTGGAATTCCTTTGTATGTTTTAAGTCGTGATCCAGACCTCTGGGAGTCTCCTAATGAGTTCAAGCCTGAGAGATTCAGTCCAGAGAGCAAGACAGAGATCAACCAGTGTGCCTTCATGCCTTTTGGACTCGGGCCTCGAAACTGCATTGGAATGAGGTTTGCTCTAATGATGATGAAGCTTCTTGTTGTGAAGCTGCTACAGAAATACACTGTGGAAACATGTAAAGAGACGCAGATCCCTGTAcagctgaactttttttttcagccGAAGGTTCCCATCACACTGAAGTTAATACCAAGGTCTCACAAGGAAAAACAATAATGGAAATGTGGAGCATTATAATAGCATacacaatttaattttagtaATGGATAATTAACAAAATTACCTGTATTAAGGTTTAATTTTAGGTGTCTATATACTGTATGCTGTCTTTTTATATTCACCATTTACTAATTACATTGAAATTATTGCTCGTTGTTTCGTGGTtcattaatgttttgtttattttatactgATTGATGATGTTTGATgtttaaaaatactacattattaAAAAGCATAATTTTAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3060 Enables heme binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in familial Mediterranean fever. Orthologous to human CYP3A4 (cytochrome P450 family 3 subfamily A member 4).

Ensembl:

ensembl_id ENSDART00000018676

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051957 lncRNA downstream 6410 40959578 ~ 40962832 (-) True XLOC_026677
TCONS_00053084 lncRNA downstream 191519 40774418 ~ 40777723 (-) True XLOC_026671
TCONS_00051941 lncRNA downstream 439466 40527285 ~ 40529776 (-) False XLOC_026667
TCONS_00051940 lncRNA downstream 439467 40527285 ~ 40529775 (-) False XLOC_026667
TCONS_00051942 lncRNA downstream 439467 40527468 ~ 40529775 (-) True XLOC_026667
TCONS_00051965 lncRNA upstream 419541 41396123 ~ 41512210 (-) False XLOC_026681
TCONS_00051966 lncRNA upstream 468612 41445194 ~ 41512210 (-) True XLOC_026681
TCONS_00051968 lncRNA upstream 554700 41531282 ~ 41535761 (-) True XLOC_026682
TCONS_00051975 lncRNA upstream 1028638 42005220 ~ 42032476 (-) False XLOC_026685
TCONS_00053085 lncRNA upstream 1206771 42183353 ~ 42189025 (-) False XLOC_026687
TCONS_00051955 mRNA downstream 3646 40958870 ~ 40965596 (-) False XLOC_026677
TCONS_00051956 mRNA downstream 3914 40958894 ~ 40965328 (-) False XLOC_026677
TCONS_00051954 mRNA downstream 13462 40947961 ~ 40955780 (-) True XLOC_026676
TCONS_00051953 mRNA downstream 23518 40936097 ~ 40945724 (-) True XLOC_026675
TCONS_00051952 mRNA downstream 23532 40936094 ~ 40945710 (-) False XLOC_026675
TCONS_00051962 mRNA upstream 2415 40978997 ~ 41292275 (-) False XLOC_026679
TCONS_00051963 mRNA upstream 3682 40980264 ~ 41292569 (-) True XLOC_026679
TCONS_00051967 mRNA upstream 554697 41531279 ~ 41535761 (-) False XLOC_026682
TCONS_00051969 mRNA upstream 653023 41629605 ~ 41715690 (-) True XLOC_026683
TCONS_00051970 mRNA upstream 807960 41784542 ~ 41795917 (-) False XLOC_026684
TCONS_00051939 other downstream 439463 40526882 ~ 40529779 (-) False XLOC_026667
TCONS_00051938 other downstream 439464 40526879 ~ 40529778 (-) False XLOC_026667
TCONS_00051924 other downstream 810555 40154294 ~ 40158687 (-) True XLOC_026658
TCONS_00051921 other downstream 880441 40088685 ~ 40088801 (-) True XLOC_026657
TCONS_00051914 other downstream 1011768 39957358 ~ 39957474 (-) True XLOC_026654
TCONS_00051964 other upstream 335440 41312022 ~ 41312143 (-) True XLOC_026680
TCONS_00051981 other upstream 1889501 42866083 ~ 42866200 (-) True XLOC_026691
TCONS_00052007 other upstream 3105041 44081623 ~ 44094226 (-) False XLOC_026707
TCONS_00052055 other upstream 6218555 47195137 ~ 47195234 (-) True XLOC_026732
TCONS_00052070 other upstream 8101180 49077762 ~ 49077879 (-) True XLOC_026748

Expression Profile

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