RNA id: TCONS_00053392


Basic Information

Item Value
RNA id TCONS_00053392
length 888
RNA type mRNA
GC content 0.50
exon number 18
gene id XLOC_027086
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 7508316 ~ 7544687 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACTGTCTGCTGCACCAACCATCAAGATAAGATCCCTCTCTTTCTCCTTGAGCAGATCTCAGGAGTCAACTAGTCATGGCTGACACAGAAGACGTTGTGGAGGAGGAAGTGCAGGAAGTGGAGGAAACCGAAGAGGAAGTGgaagTGCCGCCTCCAACAGAGGAAGAGCCAGCCCCTGAAGTGGAAGAGCCTCCGGAAGTCGAAGAGGAGCCAGAACCAGAACCACAAGAAGCCCCGGTTGCGGAGGAAGTCACAGATGAGACAAAACCAAAGCCAAAATTCATGCCCAATATCTCGGCTCCAAAGATTCCTGAGGGAGATAAAGTGGATTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAAGATGAAGAAGAACTGATCGCGCTGGTCAACAGAATCGAGAAGCGGCGCGGCGAGAGGGCAGAGCAGCAGAGAATCCGTGCAGAGAAAGAGAAGGAGAGACAGGCCCGTCTGGCCGAAGAAAAAGAGAGGCGAGAGCAAGAGGAACAGAGGAAGAAACACGATGAAGATGCCAAGAAGAAGAAGGCCCTCACCAACATGACACACCAGTATGGAGGAATCCAGCAGAAGGGCGACGGCCGCAAAGGAGCAAagaaacagacagagagagagaagaagaagaagatcctGGCGGAGAGAAAGAAGCCACTGAACATCGATCATCTTTCTGAAGATAAACTGAAGGAGAAGGCCAGTGAAATGTGGCAGTGGATGATGCAGTTGGAGGCCGAGAAGTTTGACCTCAGCGAGAAACTCAAGAGGCAGAAATATGATATGAATGTTCTCCAGACCCGAATCAATGAACAACAGA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0045214 sarcomere organization biological_process
GO:0005861 troponin complex cellular_component
GO:0005523 tropomyosin binding molecular_function
GO:0030172 troponin C binding molecular_function
GO:0031013 troponin I binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-27 Predicted to enable tropomyosin binding activity; troponin C binding activity; and troponin I binding activity. Predicted to be involved in muscle contraction and sarcomere organization. Predicted to act upstream of or within regulation of muscle contraction. Predicted to be part of troponin complex. Human ortholog(s) of this gene implicated in intrinsic cardiomyopathy (multiple). Orthologous to human TNNT2 (troponin T2, cardiac type).

Ensembl:

ensembl_id ENSDART00000170924

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053391 lncRNA upstream 1846 7415280 ~ 7506470 (+) False XLOC_027085
TCONS_00053387 lncRNA upstream 102057 7391354 ~ 7406259 (+) False XLOC_027084
TCONS_00053389 lncRNA upstream 105551 7391490 ~ 7402765 (+) True XLOC_027084
TCONS_00053388 lncRNA upstream 111291 7391462 ~ 7397025 (+) False XLOC_027084
TCONS_00057598 lncRNA upstream 396294 7111729 ~ 7112022 (+) True XLOC_027082
TCONS_00057599 lncRNA downstream 7522 7545660 ~ 7554621 (+) False XLOC_027087
TCONS_00057600 lncRNA downstream 7522 7545660 ~ 7583552 (+) False XLOC_027087
TCONS_00057601 lncRNA downstream 7569 7545707 ~ 7587145 (+) False XLOC_027087
TCONS_00057602 lncRNA downstream 7645 7545783 ~ 7549822 (+) False XLOC_027087
TCONS_00057603 lncRNA downstream 7649 7545787 ~ 7583552 (+) False XLOC_027087
TCONS_00053385 mRNA upstream 99003 7391215 ~ 7409313 (+) False XLOC_027084
TCONS_00053384 mRNA upstream 102063 7391110 ~ 7406253 (+) False XLOC_027084
TCONS_00053386 mRNA upstream 102770 7391400 ~ 7405546 (+) False XLOC_027084
TCONS_00053375 mRNA upstream 514033 6833583 ~ 6994283 (+) False XLOC_027077
TCONS_00053402 mRNA downstream 139180 7677318 ~ 7713665 (+) False XLOC_027089
TCONS_00053403 mRNA downstream 160724 7698862 ~ 7713091 (+) True XLOC_027089
TCONS_00053404 mRNA downstream 279858 7817996 ~ 7821466 (+) True XLOC_027091
TCONS_00053405 mRNA downstream 284635 7822773 ~ 7826304 (+) True XLOC_027092
TCONS_00053406 mRNA downstream 289123 7827261 ~ 7836413 (+) True XLOC_027093
TCONS_00053390 other upstream 92879 7415337 ~ 7415437 (+) True XLOC_027085
TCONS_00053383 other upstream 344442 7163758 ~ 7163874 (+) True XLOC_027083
TCONS_00053382 other upstream 483033 7025167 ~ 7025283 (+) True XLOC_027081
TCONS_00053381 other upstream 593465 6914716 ~ 6914851 (+) True XLOC_027079
TCONS_00053350 other upstream 1723445 5778229 ~ 5784871 (+) True XLOC_027061
TCONS_00053415 other downstream 596456 8134594 ~ 8134710 (+) True XLOC_027099
TCONS_00053421 other downstream 965549 8503687 ~ 8503801 (+) True XLOC_027102
TCONS_00053451 other downstream 2054393 9592531 ~ 9598700 (+) True XLOC_027123
TCONS_00053480 other downstream 3168617 10706755 ~ 10713584 (+) False XLOC_027140
TCONS_00053484 other downstream 3214602 10752740 ~ 10763285 (+) False XLOC_027142

Expression Profile

//