RNA id: XM_021588374.2


Basic Information

Item Value
RNA id XM_021588374.2
length 2920
RNA type mRNA
GC content 0.53
exon number 4
gene id LOC110507951
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 31853996 ~ 31868448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAGCGGGGGGAACCCTACTCTAAAAGGGGACTAGGGAGTCTGTGGCTTGGGAACGGGGAGTCTTGGGAGAGTGACTTGGGTTGGTCGGAGTTGCATGCAGGACCGGGGTTCCTGAGCACCCCCCTCCTGGGACAGACACGCGAGATGCCACCCTCGCCAAGGAAATCTATCAAGGAGCGCGAGCTGTTCTCCCTGACCTCATCTCTACCATGTTGCTCGTGGCTGAAGGTAGTTCTGTGCAGCCACATGCGCAATCTATGGATGGTGCTCATGGCCCTCACTGTGCTCTGTGTGGCCATCCAGATCCTAGGAGTCGTCTGGCaatccagGAATGATAAGATGTTAAGCGAGAAGCTCCTGAATGTGCAGTTCACCATCAAGATCCAGAGAACGCTCCCGACGGAGCAGAGGGACTGGGTACACTTGCGCTCTTCGCACACCCCTGTTGTAGAAGAGGAAATGAGGTCACAGGAGGAAGGAGCTCTTAAACAACGGGCCAAAGGGAAGCAGAAGGTAGCAGAACATCAACATGGCAGAGATGAGTCAGGGGTGGAGAGGCGTGTCCAGGAGCATCACCAACATCTAAAGCTCTCATACACTGTCAATAAGGTCAAAGACTCTAGGAAAGAGGCCAGGGGTAAAGTTTCAGCAGTAAAGGCAGCCCTGCCCAAAGTcacactgggtgatgatgagttGGATTTGGGGGTTCCTGGGTCTGTAGTTCTCCAGCTGGGCCACCCATCTATCAAAGTGGTATCCACCTTACCATACAAACCTCCCGAACTCCTCTCAACCAATCAGCTGAAGAGTAGAAATAGCCCTGCCCCTTTAGGCACCGACTCTGTAGTTGCCGGGGTGATAAACGAGGTGAAATCTGAGGTAGCCAGCGCCCCCTGTCGGCCGAAGAACCACATCGTCTTTCTCAAGACGCACAAAACGGCCAGCAGCACCATCCTGAACATCTTATATCGCTATGGCGACAGCCGCAATCTGACCTTCGCCCTTCCACTGAACAAGCACAGCCAGCTGTTCTATCCCTTCTTCTTCGCCTCACACTTTGTGGAGGGAGTGAGGAGCCGCAGTGTCAAAGAGTTCAACATCATGTGCAACCACATGAGGTTCAGACCACCAGAGGTGAGGAAAGTGATGCCCCAGGACACGTTCTACTTCTCCATCCTGAAGAACCCCGTTGCCATGATGGAGTCCATTTTCATCTACTACAAGAGCATCCCCGCCTTCCACAAGGCCCGCAGCCTGGATGACTTCCTTGACAATGGTTGGCGTGGTTACAACACCTCCCTGCCCAACAACCATTATGCCCGTAACATCCTGACCTTTGACTTTGGCTTCGACAACAACGTCGTAACAGATACACCCGGAGACCTGGAGACGCGGGGTGCCAAAGCCATTGGCGCCATTGAGCAGGACTTCCACCTCATCCTCATCTCAGAGTACTTTGACGAGTCCATGATCCTGCTCAAGCGCGCCCTCTGCTGGTCTCTGGACGATGTCGTCTCCTTTAAGTTGAACAGCCGAAGCGAGCGCACACGGCACATGCTCTCCCCGCACACCGCCGACAAGATCAGAGCCTGGAATGCCCTTGACTGGCAGCTCTACCTGCACTTTAACATCACCTTCTGGCGACGCGTGGACGCTACTGTGGGGCGTGAGGAGATGAGACGGGAGGTGACTCGGCTGCAGGAGCGACGTGCCGAACTAGCCAAAACCTGCCTGAAGGATGGTGGTGCAGTGGACCCGTCGCAGGTGAAGGACGCCGGACTGAAGCCCTTTCAGTACGGGGCGGCCATCATCCAGGGCTACAACCTGAACCCTGGGCTGGTTGGGCCTACCAAAACACACTGTCAGAACCTGGTCACTCCAGAGCTGCAGTACACAGACACTCTCTACACCAAGCAGTTCCCTGAGCTTGCCGCCAGGCAGAGACAGGCTGCCAAACTGGTCGCCTCACAGCGTCAGCCTAGTTCAGTTAAGGTCAACCCGAACAAAGCAGCCATGACAGGGCCGGTGAGGGTGAGAGAGGCCAGACACAGTAGGACAGCCAGGAGTGGACATAGAAACCCTCATGCTCAGAAACAAAATGACCTCCCCTCAAGTGCCCTGTCTAAAATCACTGCAGCTAGAAGTGACAGAAACATGCCTTAAGGGGGGGCTCTTTTAACACAGACTGGGGACTAGTGGGAAGATCCACAGGAGCTCATTGCTGCTGCGTACTGGGGACTTTTTAAGCTGAACAGCCAATGGCTATGTTTTGTCTATACAGTGAGGACCTTTCGCTGCACATTATGTTCACTCTGGCTGGCTGCAGTGCACAGGGTCAGTTGGCTGACTTTGGCGGCACTAGGAAGCTAGGGAAGCTCTAGTGTTTCTGCCAAACGATGCTGGACCTGTGTGGGTGGAGGGGATGGAATTGGGGGACGAGAGAAGGAAGAgtaggaaagagaaggagagtgcACCTGGGGTGACTGTCCTGCCTTGACTGGTTGGACTGGAAGTAGCCTTTTGTGGCACACATCCCCTAAACCCTCTCATCTAATATTTCCCCTTGATCTTGTTACACCCTGAGGTTTACAATTTGAACCCTTGAGGTGTACAGTCGTggtcaaacgttttgagaatgacacaaatataaattttcacaaagtctgctgcctcagtttgtatgatggcaatttgcatatactccagaatattatgaagagtgatcagatgaattgcaattaattgcaaattcTTTCTTTGCCATGCACATGAATTGAATTCCCCCCAAAAcatgtccactgcatttcagccctgccacaaaaggaccaactgacatcatgtcagtaattatctcgttaacacaggtgtgagtgttgacgaggacaaggctggagatcactctatcatgctgattgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2371605 lncRNA upstream 5267 31848516 ~ 31848729 (+) True G2074128
TU2371601 lncRNA upstream 8201 31845577 ~ 31845795 (+) True G2074124
TU2371594 lncRNA upstream 12668 31840974 ~ 31841328 (+) True G2074117
TU2371590 lncRNA upstream 14960 31838777 ~ 31839036 (+) True G2074113
TU2371537 lncRNA upstream 46689 31806993 ~ 31807307 (+) True G2074064
TU2371638 lncRNA downstream 7788 31876088 ~ 31876296 (+) True G2074161
TU2371640 lncRNA downstream 8441 31876741 ~ 31876958 (+) True G2074163
TU2371645 lncRNA downstream 12559 31880859 ~ 31881085 (+) True G2074168
TU2371648 lncRNA downstream 15212 31883512 ~ 31883731 (+) True G2074171
TU2371665 lncRNA downstream 38182 31906482 ~ 31913444 (+) True G2074188
XM_021588375.2 mRNA upstream 83231 31748676 ~ 31770765 (+) True efhd1
trnag-ucc-233 mRNA upstream 105644 31748281 ~ 31748352 (+) True trnag-ucc-233
trnaw-cca-60 mRNA upstream 106783 31747142 ~ 31747213 (+) True trnaw-cca-60
trnai-aau-85 mRNA upstream 107765 31746158 ~ 31746231 (+) False trnai-aau-85
XM_036965215.1 mRNA upstream 114582 31715396 ~ 31739414 (+) False LOC110507953
XR_005040061.1 mRNA downstream 2440 31870740 ~ 31871707 (+) True LOC118944767
XM_036965862.1 mRNA downstream 401906 32270206 ~ 32478694 (+) False LOC110507983
XM_036965859.1 mRNA downstream 401906 32270206 ~ 32488659 (+) False LOC110507983
XM_036965860.1 mRNA downstream 401906 32270206 ~ 32488659 (+) False LOC110507983
XM_036965861.1 mRNA downstream 401906 32270206 ~ 32488659 (+) False LOC110507983
TU2369780 other upstream 1581999 30270111 ~ 30271997 (+) False G2072515
TU2369781 other upstream 1582378 30270111 ~ 30271618 (+) True G2072515
TU2369388 other upstream 1839172 30012753 ~ 30014824 (+) True G2072178
TU2369390 other upstream 1840349 30011465 ~ 30013647 (+) False G2072178
TU2369385 other upstream 1840733 30011465 ~ 30013263 (+) False G2072178
TU2371726 other downstream 97718 31966018 ~ 31974065 (+) True G2074226
TU2371728 other downstream 100237 31968537 ~ 31976501 (+) True G2074227
TU2372015 other downstream 328513 32196813 ~ 32197204 (+) True G2074502
TU2372090 other downstream 443690 32311990 ~ 32312276 (+) True G2074577
TU2371979 other downstream 579768 32448068 ~ 32448464 (+) False LOC110507983

Expression Profile