RNA id: XM_036965043.1


Basic Information

Item Value
RNA id XM_036965043.1
length 1617
RNA type mRNA
GC content 0.66
exon number 2
gene id LOC118944687
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43190777 ~ 43218309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGGTGGTGGGGCCACGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTTGGGGCCAGGATGGAGGTGTGGGGCCAGGACGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGAGATGGAGGTGGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAAGTGTTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGACCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTTAGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGtgggaccaggatggatgtgtgGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGACCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGCGAGATGGAGGTGTTGGGGCCAGGATGGAGTAGTGGGGAAATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGTTGTAGGGCCAGGATGGAGGTGTAGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTTGGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTTAGGCCAGTATGGAGGTGTGGGGCCAGGATGCAGGTGTGGGGCCAGGATGGAGGTGTTAGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGGATGTGTGGGGCCAGGATGGAGGTGTGGGGCCATGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGAGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAGGTGTGGGGCCAGGATGCAGGTGTGGGGCCAGGATGGAGGTGTGGGGAGATGGAggtgtggagagatggaggtgtgGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGGTGTGGGGCCAGAATGGAGGTGTTGGGCCAGGATGGAGGTGTGGGGCCAGGATGGAGCCCGTACCCCACGCAGCCCGTACCCCACGCAGCCCGTACCCCACGCAGACGGTACCCCACGCAGACGGTACCCCACGCAGCCCGTACCCCACGCAGCCCGTACCCCACGCAGCCCGTACCCCACACTACTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2384149 lncRNA upstream 7443 43183134 ~ 43183334 (+) True G2084902
TU2383845 lncRNA upstream 45933 43143796 ~ 43144844 (+) True G2084675
TU2383753 lncRNA upstream 105123 43083011 ~ 43085654 (+) True G2084604
TU2383826 lncRNA upstream 125236 43064896 ~ 43065541 (+) True G2084660
TU2383811 lncRNA upstream 172680 43015481 ~ 43018097 (+) True G2084647
TU2384172 lncRNA downstream 697 43219006 ~ 43219267 (+) True G2084923
TU2384174 lncRNA downstream 4137 43222446 ~ 43223063 (+) True G2084925
TU2384175 lncRNA downstream 7830 43226139 ~ 43226359 (+) True G2084926
TU2384178 lncRNA downstream 13351 43231660 ~ 43231877 (+) True G2084929
TU2384162 lncRNA downstream 67597 43285906 ~ 43286743 (+) True G2084913
XM_036965656.1 mRNA upstream 47669 43111797 ~ 43143108 (+) True LOC110508067
XM_036965654.1 mRNA upstream 49956 43111797 ~ 43140821 (+) False LOC110508067
XM_036965655.1 mRNA upstream 49956 43111797 ~ 43140821 (+) False LOC110508067
XM_036965659.1 mRNA upstream 79109 43096643 ~ 43111668 (+) False LOC110508068
XM_036965658.1 mRNA upstream 79109 43097081 ~ 43111668 (+) True LOC110508068
XM_021588536.2 mRNA downstream 330943 43549252 ~ 43557059 (+) True LOC110508093
XM_036965634.1 mRNA downstream 355027 43573336 ~ 43700703 (+) False usp32
XM_036965635.1 mRNA downstream 355027 43573336 ~ 43700703 (+) True usp32
XM_036965663.1 mRNA downstream 483252 43701561 ~ 43728339 (+) True si:ch211-167j9.5
XM_036965223.1 mRNA downstream 560763 43779072 ~ 43799038 (+) False sult3st1
TU2383825 other upstream 126520 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 929140 42260523 ~ 42261637 (+) True G2084156
TU2382880 other upstream 1078741 41971259 ~ 42112036 (+) False G2083851
TU2382881 other upstream 1177785 41972828 ~ 42012992 (+) True G2083851
TU2382447 other upstream 1683604 41506359 ~ 41507173 (+) True LOC110507232
TU2384320 other downstream 313961 43532270 ~ 43532578 (+) True G2085037
TU2384422 other downstream 514086 43732395 ~ 43733894 (+) True G2085122
TU2384668 other downstream 899914 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 1189744 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 2268328 45486637 ~ 45487737 (+) True LOC110508103

Expression Profile