RNA id: XM_036965044.1



Basic Information


Item Value
RNA id XM_036965044.1
length 669
RNA type mRNA
GC content 0.71
exon number 2
gene id LOC118944688
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 43896547 ~ 43898559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGTTGCAGATGATTTGTTTGGTTCCCCTAACCTGCAATGTGGCAGGTCAGGGGAGGACACGCGGGGGGTCAGGGGAGGAGACGCGGGGGGTCAGGGGAGGAGACGCGGGGGgtcaggggaggaggggaagagacgCGGGGGGTCAGGGGAAGAGGCGCGGGGGGTCAGGGGAAGAGGCGCGGGGGGTCAGGGGAAGAGGCGCGGGGGGTCAGGGGAAGAGGCGCGGGGGGTCAGGGGAGGAGGCGCGGGGGGTCAGGGGAGGAGGCGCGGCGGGTCAGGGGAGGAGACGCGGCGGGTCAGGGGAACCGTCGCGGCGGGTCAGGGGAAGAGACGCTGCGGGTCAGGGGAACCGGCCCCGCGGGTCAGGGGAGGAGGCACGGGTCAGGGGAAGAGACGTGGCGGGTCAGGGGAAGAGACGCTGCGGGTCAGGGGAACCGGCCCCGCGGGTCAGGGGAGGAGGCACGGGTCAGGGGAAGAGACGTGGCGGGTCAGGGGAGGAGGCGTGGCGGGTCAGGTGAGGAGGCGTGGCGGGTCAGGGGAGGAGGCGCGGCGGGTCAGGGGAGGAGGCGCGGCGGGTCAGGGGAGGAGGCACGGCGggtcaggggaagggttagctaaaacgcTACAGTTGTCAATAGCTGTTGTCCTCACTGGAGTCCTGTTCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2384497 lncRNA upstream 24115 43872163 ~ 43872432 (+) True G2085178
TU2384494 lncRNA upstream 38320 43857919 ~ 43858227 (+) True G2085175
TU2384470 lncRNA upstream 41597 43784348 ~ 43854950 (+) True G2085153
TU2384485 lncRNA upstream 54308 43841621 ~ 43842239 (+) True G2085167
TU2384448 lncRNA upstream 141693 43754367 ~ 43754854 (+) True G2085137
TU2384532 lncRNA downstream 4296 43902855 ~ 43903416 (+) True G2085205
TU2384554 lncRNA downstream 35099 43933658 ~ 43933987 (+) True G2085225
TU2384574 lncRNA downstream 71093 43969652 ~ 43969931 (+) True G2085242
TU2384583 lncRNA downstream 94837 43993396 ~ 43994165 (+) True G2085250
TU2384609 lncRNA downstream 140249 44038808 ~ 44041951 (+) False G2085275
XM_036964962.1 mRNA upstream 51756 43801102 ~ 43844791 (+) True LOC110508083
XM_036965223.1 mRNA upstream 97509 43779072 ~ 43799038 (+) False sult3st1
XM_021588530.2 mRNA upstream 97509 43793987 ~ 43799038 (+) True sult3st1
XM_036965663.1 mRNA upstream 168208 43701561 ~ 43728339 (+) True si:ch211-167j9.5
XM_036965635.1 mRNA upstream 195844 43573336 ~ 43700703 (+) True usp32
XM_036965731.1 mRNA downstream 18662 43917221 ~ 44069585 (+) False LOC110508084
XM_036965733.1 mRNA downstream 60649 43959208 ~ 44069585 (+) False LOC110508084
XM_036965735.1 mRNA downstream 81316 43979875 ~ 44069585 (+) False LOC110508084
XM_036965734.1 mRNA downstream 81860 43980419 ~ 44069585 (+) False LOC110508084
XM_036965737.1 mRNA downstream 107097 44005656 ~ 44069585 (+) False LOC110508084
TU2384422 other upstream 162653 43732395 ~ 43733894 (+) True G2085122
TU2384320 other upstream 363969 43532270 ~ 43532578 (+) True G2085037
TU2383825 other upstream 832290 43063288 ~ 43064257 (+) True G2084659
TU2383238 other upstream 1634910 42260523 ~ 42261637 (+) True G2084156
TU2382881 other upstream 1883555 41972828 ~ 42012992 (+) True G2083851
TU2384668 other downstream 219664 44118223 ~ 44119239 (+) True G2085314
TU2385505 other downstream 509494 44408053 ~ 44410050 (+) True G2085969
TU2386442 other downstream 1588078 45486637 ~ 45487737 (+) True LOC110508103
TU2386453 other downstream 1630897 45529456 ~ 45529939 (+) True mtus2b
TU2387070 other downstream 1898540 45797099 ~ 45798593 (+) True G2087149

Expression Profile