RNA id: XM_036964718.1


Basic Information

Item Value
RNA id XM_036964718.1
length 4789
RNA type mRNA
GC content 0.52
exon number 6
gene id zmp:0000001236
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48633372 ~ 48774681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGGAATACTCATACAATGAGAGTCTAGTACCCCCGCAATTCCCGTGCCTCCGTGTAGGCTACAGCTCGGACGGACAAATGATTGTCAATGGAATACTTGACACAGCCCAGCTAGAATCACTATCAGTTTGTGTGTTCGCTCCTCGGCGTTTCTTACCCGTGTCTTTACAGTTTCGTTATTTTCAGAATTGACCAAATGTAGGCTAACCATCTGTTTTTGATCAGGACCAGGGGAAcgggggattttttttattttttttgctaatgtaaaaaaaaaaaaatatcatgtCGTGAGTCGCTGGAAGTTTCGTGTATTTTCCCAATATAACCTTCTGTTTTGGTGATGACTCGTCCACGTTGAATACACAGTTAATATTCGTCGCAAAGTGTGAACTTCTTGCGGGGTGCCAGAGGGCATGGGAGAAGCAACTCCCGCACAGCCCGCAGCAGGAGGGTTCGTACCAATGTTAGGTCTTGGTATGGTGGGCTCTATGCCAGGCGGGGGGGTTGCGGGGCCGCTCGCGACCTCCCGGGGCTCTGCGGTCCCGCAGCTTCACAGCGCCATTGTGGAACGGTTACGCGCGCGGATAGAACTGTGTCGAAGGCATCACTCCACCTGTGAGAACCGGTACCAGCGAGGCCAGGCCGAGAACTCTGACCGGGAACACGAGAGTACTCTTCACCTGCTGAACATTGTGCATCAGGGACCCGGGAATAGGAAAACCAAGGGGAACCGGGCTTCGAACCAACAACCTCCAGACTACAGCAGAGTTAATGGAGAACAGAAATGCCAGAGCTCCTCAGCGGGAGACCAGAAGATCTCAACACGAATAGCACTCCAAGGGTCTCTGAGGAGGAAGATTGAGGGCCATACTCCGGGCTACTCCTCCCAACAGAATGGCCTGTCCTGTGGGCCGTCGGGGCTGGACTTCAAACGTGTCCGTCTGGAAGGGGGCAGCGGTGGTTTGGGTGGGCCCTGTTCCTTCAGCTCACAGTCCATGGGAGGCGACGCATCGTCCATAGGCCACACCCTAAACAGGAAAAACAACAACAGCGGCTACATGATGCCCCATGGGGTCATGAACTCTGACCTCATCAACATGACCCTGAAGGAGATGAAGAAGGAACCTATAGACCATGTTACTTCCTGCGGCCAGAGGTCTACTGAGATGATGGTGTTCAGCAGCCAGATCGACCCGGAGCTTCAGGATCTGTTCGACGAGCTGACCAAGACCGTCCCGTCTCTGCACGACCAGGAGTTTGAGAAGATGCTGAAGCAGGACGATACGTTCGGCCTGGCGGATCTGGAGCGCAGTGCAGCTACCCTCTGCTCCCACCTGGAGAAGCCCATCAAGACAGAGTACTCCTCTCCAGACTACGGCCAGACACATGGCCATGGTGGCTCCTCACAGCTCCGCCCGGCATCCACTGGTCCCTCCTTCACCATGTCCAGCTCCTCCCCCATCACCAACCAGAAGAGCCAAGGCCAGGGGCCCTCAGGGCTGGCTGGACCCCCCAGCAGAGGTCTCCCTGGCTGGCCTGAGGTGTCCCATGCAGAGCAGCTAAAGCAGATGGCAGCCAACCAGAACCAGCAGCAGCCCAACCCCCAGGCCCTGCTCCACCACCAACAGCCACACCAACAGGCTCAggctggagggggaggaggaccaGGGACCAGTTGGAACACGCAGCCCTCCTCCAGCTCCTTCCCCCAGGACAAGCTCTCCAACCCGGCCTCAATGGGCCAGAGGATCACCCCCCAGACCTCCATGGACAGTCAGGGTAAAGTCATAAACAACTGTCTGTTCAAGCCCAACGGACACAACACCTCCAGCCACCTGGATATGAAGGTGCTCAGCAACAAACCaatgctccacttcagccccaaAGCATCCCAGCAACCCTCCACTATGGCAGGTCCACTGAGTAAGACTACGgcccatcaacaacaacaacagccgtCCACCTCAGCCCAGAACTTGAACACGAACCACCCAGTTCATAACTACCAGAACCCCCAGCAGCAACGGCCCATGTCTGGGCCTCCTCATATGCAGCCCAAGTCCCTGGCCCAGAGAACCCCTCTCAGCCAGCATGGAGCTGGACCTGGGCTCCACTTTAAACTGGCTCAACAACGACAGATGCCTCCTGGGCCTCGTCTGCCCACCAACGGCAGCCTAGTGGGGATGTCAGCCCAGGCCCAGGCCAACCAACGTCCCCCTGCTCCTGGCTCCAACACCCAGCAGAAACCCCCAGGACCAGGGAAGACCCAGGTCATGCAGAGACAGCTAGCCCAGCAGCAGCACATCATCAATGACTCTGACAAAATCAATAGTAGCCAGGATCTGTTTAACCGTCATCTAACCAGACCACCACCAGACTATAAACAGCCCAGAGGAATGGTCCAACCTACAGGCCTTTTCACAGGTATGAGTTCTTCGCAGTCGTTGTCGACCAACGGGTCTGACCAGAGTGACCTTCTATCCATGTCCTGCCACATGCCCAGCGGCCCGGGATCCAAGATGACCCCTCCTCCCACGGACTGGAGGTTTGGAAGAGGCCCCAACACTCACCAGATCCAACAGCACAACAACCAGACCAAGATGGGACTCGGAGTCGGAGGAGGACTCAACCAAAACAAGTCCAGGTTCCCTGGTCCTCCCAACGGCCAGGGTAATGGGTTTGAGGTGGGTGGTCTTACCAGTGTACAACATCCCTCAAGGACATCAGTAGGCCAGCAGGGTGGAGGGATGCCCAGTCAGGGGCAGGGTCTCGGGCTGGGGGGTGTGATGGGCTGGCCTCCTGGAGCTAAAGCTCCCATCATGGTCCCTGGGTCTCTCGGGGTAAGGCAGCCCCCGAACTCGCTCCAACCACAGGGTGCCCATTCCCAGTCTCAGCTCGACATGTCCAGCCACCAGTACCCTCCTGGCCCCCGGCACATAGGCCCTGGCCCACCCAACCAGGTGGCACCAGAAATTGGCATGCTGCCTCTGAACCCAGCCCTCCGcagctccaccaccaccaccaaccccaGACCCAGCCAACCCATGATGCCTCCTCTGCCAGGGCTACCAAGCCTCAACCAGGCCTCTCCGGAGCAGAGGGTTCCCGCTGGGGGCAGCACCATCGGGGTCTTCCCACCACATAACCACAACCCTGGGGGAAGCTACCAGACCCAGAACAGCCGGGCTGTTAACCGACTGACCTTTGAATTCCTCCAGGAGGGAGACAACACCGTCCCAGGGATCAACACTGACTCAGACTTCATCGACTCGCTGCTGAAGTCTGGATCCGGCAACGACGACTGGATGAAAGACATCAACCTCGATGAGATCCTGGGCAGTCACTCATAAAGTGGGATGATGTGGGATTGCATAaatagggcccagagtttttccatGCAGCTCTCATGAATTGGGGTTCATTCCAGAGTTGTTCTCTTCTTCAAGTCTCATGAATTGGGGTTCATTCTAGAGAGTTTTTCTGTAGAACAATTCCACAGAATTGGTGGCCAGTTTTTCCATCAAAACATTCCATAGAATTGGGAGCGCTGGTCAGGAGTTTTTCCAGGTTAGATGGGCCATGTGGtgtggaaaaactcctggccttaATTATAGGCTCCAACTAGAGCCAGGAGCTCCTCCCTCTTCTGGTCAGGATAAACTCCAGGACCCATCCATAAAGACTGATAACTGCAAACGCAGAACTTTCCCCATACAGAGACTATGGATGGCCTTGggaagtgcatcccaaatggcaccctattccctttatagtgcactactgtagaccaggatccatagggctatggttgaaagtagtgcactatatagggaatagggtatcatttgaAACACAGACCATGAATGGCCATGAGTCAGAATTCATCTAAAGGGATTACATTTGCAAAGCTATAATGTCATTTTGTAAACCCAATATATAATTTGATATCTAATTGTACTTTTTGTGTATTCCTGTGAAGAAATATATATTCTGTATAATAATATTTTAGTACATTATAAAGGTTAATTGAATAAGAGGATTCTCTGACAGCGTCTTGACCTGATTCTGAATATATTCTATCAAACCTTTCTCTTTTCATAACATGGGTATCGTCcaaaaatgtcaccctattccatacatagtgcactacccagTCTTCattatgtaggggatagggtgtcatttctgACACAGATATGGGAGGTAGTGTACTGCTAGTGACTAGAGCCATGTGGCCCCTGTAATACATGGGGTAGAGGGGTCCAACCATGGTCAACTGTGAACAGGAAGTGGCTGTCATACTTCCAGactttgtcccaaatgacaccgtaATTCCCCTTTTATTATGCTCTACCACATAatgctctggtcagaagtagagTACTGTAATAGGGAATAGAGCGTCATGACAGGATATACTACCCCCCCCCTTTTATTATGCTCTACCACATAatgctctggtcagaagtagagTACTGTAATAGGGAATAGAGCGTCATGACAggatatacacccccccccccccccccccccccacccagacCCATCGTGGTGTTTCATGTTTTGAATGATGACGctgtctcaggtgtttgttaTATTTAGACACTTTACTCATCATGTTATTTCTACTTTTCTGGCTCATCGCCTGGGACTGGTTTGAACGGCAAGCCACACCTTAAACcatttattttagattttttgaTCTAATATTTAATAATCTAttgggagaaaaaaatatatacgacATTATAAACAATCTAatgaataaaaatgttttaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389768 lncRNA upstream 12922 48619945 ~ 48620450 (+) True G2089208
TU2389767 lncRNA upstream 14465 48618499 ~ 48618907 (+) True G2089207
TU2389763 lncRNA upstream 15903 48615267 ~ 48617469 (+) False G2089204
TU2390612 lncRNA downstream 142577 48917258 ~ 48918081 (+) True G2089900
TU2390615 lncRNA downstream 148442 48923123 ~ 48923343 (+) True G2089902
TU2390616 lncRNA downstream 148900 48923581 ~ 48923815 (+) True G2089903
TU2390617 lncRNA downstream 149181 48923862 ~ 48924312 (+) True G2089904
TU2390635 lncRNA downstream 252407 49027088 ~ 49027310 (+) True G2089922
XM_036964907.1 mRNA upstream 8924 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 174933 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 314287 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 314287 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1150338 47482390 ~ 47483034 (+) True LOC118944690
XM_036965696.1 mRNA downstream 315202 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 426767 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 548332 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1691202 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1691236 50465917 ~ 50476608 (+) False LOC110508133
TU2389657 other upstream 177886 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 442010 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 442010 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 442010 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 768543 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 152294 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 283324 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 538062 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 548488 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 558766 49333447 ~ 49334183 (+) True G2090103

Expression Profile