RNA id: TU2389657



Basic Information


Item Value
RNA id TU2389657
length 1159
RNA type TUCP
GC content 0.34
exon number 2
gene id G2089124
representative True

Chromosome Information


Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48432478 ~ 48455486 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tattctgttctattctacactgttctattctactctacattgttctattctactctacattgttctattctactctacactgttctattctacattgttctattctactctacattgttctattctactctacactgttctattctacattgttctattctactctacattgttctattctactctacactgttctattctactctacactgttctattctactctacaatgttctattctactctacactgttctattctgttgtgttctactctacactgttatattctattctacacggttctattctactctacactgttctattctgttatattctactctacacggttctattctgttctattctattctgttctattctactctgctctgttctattctactctacactgttctattctgttgtgttctattctacactgttctattctgttatattctactgtacacttctgttctgttctactctacactgttctattctgttctattctactctacactgttctattctactctacactgttctattctactctactctgttctattctactctactctgttctattctactctactctgttctattctactctactctgttctattctattctactctactctgttctattctactctacacggttctattctactctacactgttctattctactctacactgttctattctactctacactgttatgttctactctacactgttctattctgttgtgttctattctacactgttctattctgttatattctactgtacacttctgttctgttctactctacactgttctattctgttctattctactctacactgttctattctactctacactgttctattctactctactctgttctattctactctactctgttctattctactctactctgttctattctactctacactgttatattctactctacactgttctattctgttatactctacactgttctgttctactctacactgttctgttctactctacactgttctattctgttctattctattctgttctgttctactctacactgttctgttctactctacactgttctgttctgttctactctacactgttctgttctactctac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2389639 lncRNA upstream 25429 48406817 ~ 48407049 (+) True G2089112
TU2389600 lncRNA upstream 28003 48403436 ~ 48404475 (+) True nars2
TU2389632 lncRNA upstream 47124 48383952 ~ 48385354 (+) True G2089106
TU2389621 lncRNA upstream 73467 48358662 ~ 48359011 (+) True G2089096
TU2389605 lncRNA upstream 114976 48317256 ~ 48317502 (+) True G2089081
TU2389676 lncRNA downstream 14244 48469730 ~ 48470815 (+) False G2089140
TU2389677 lncRNA downstream 14244 48469730 ~ 48470815 (+) True G2089140
TU2389684 lncRNA downstream 21624 48477110 ~ 48477900 (+) True G2089143
TU2389685 lncRNA downstream 23052 48478538 ~ 48479901 (+) True G2089144
TU2389688 lncRNA downstream 32239 48487725 ~ 48488801 (+) True G2089147
XM_036964775.1 mRNA upstream 113393 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 113393 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 949444 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1355757 47074530 ~ 47076721 (+) True LOC110513068
XM_036965299.1 mRNA upstream 1375557 47020501 ~ 47056921 (+) False prcp
XM_036964907.1 mRNA downstream 4963 48460449 ~ 48624448 (+) True gab2
XM_036964717.1 mRNA downstream 177886 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 177886 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 634397 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 745962 49201448 ~ 49266635 (+) True pgr
TU2389529 other upstream 241116 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 241116 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 241116 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 567649 47854106 ~ 47864829 (+) True G2088870
TU2389165 other upstream 894533 47532422 ~ 47537945 (+) True G2088732
TU2390619 other downstream 471489 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 602519 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 857257 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 867683 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 877961 49333447 ~ 49334183 (+) True G2090103

Expression Profile