RNA id: TU2389688


Basic Information

Item Value
RNA id TU2389688
length 489
lncRNA type intronic
GC content 0.44
exon number 2
gene id G2089147
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 48487725 ~ 48488801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcttcagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcagtacattcatctccagatagctaggtggaccagtcatagtcagtacattcatctccagatagctaggtggaccagtcatagtcagtacattcatctccagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagtcatagtcaggacattcatctacagatagctaggtggaccagtcatagtcagtacattcatcttcagatagctaggtggaccagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2389685 lncRNA upstream 7824 48478538 ~ 48479901 (+) True G2089144
TU2389684 lncRNA upstream 9825 48477110 ~ 48477900 (+) True G2089143
TU2389676 lncRNA upstream 16910 48469730 ~ 48470815 (+) False G2089140
TU2389677 lncRNA upstream 16910 48469730 ~ 48470815 (+) True G2089140
TU2389639 lncRNA upstream 80676 48406817 ~ 48407049 (+) True G2089112
TU2389698 lncRNA downstream 5134 48493935 ~ 48494275 (+) False G2089153
TU2389697 lncRNA downstream 5250 48494051 ~ 48496506 (+) True G2089153
TU2389699 lncRNA downstream 12020 48500821 ~ 48501196 (+) True G2089154
TU2389714 lncRNA downstream 32105 48520906 ~ 48521204 (+) True G2089165
TU2389722 lncRNA downstream 52869 48541670 ~ 48541943 (+) True G2089173
XM_036965512.1 mRNA upstream 29286 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 168640 47640597 ~ 48319085 (+) False tenm4
XM_036964776.1 mRNA upstream 168640 47640597 ~ 48319085 (+) True tenm4
XM_036965048.1 mRNA upstream 1004691 47482390 ~ 47483034 (+) True LOC118944690
XM_021593118.2 mRNA upstream 1411004 47074530 ~ 47076721 (+) True LOC110513068
XM_036964717.1 mRNA downstream 144571 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA downstream 144571 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036965696.1 mRNA downstream 601082 49089883 ~ 49186113 (+) False trpc6b
XM_036965366.1 mRNA downstream 712647 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 834212 49323013 ~ 49323866 (+) False LOC118944717
TU2389657 other upstream 32239 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 296363 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 296363 48188209 ~ 48191362 (+) False G2089020
TU2389531 other upstream 296363 48188494 ~ 48191362 (+) True G2089020
TU2389353 other upstream 622896 47854106 ~ 47864829 (+) True G2088870
TU2390619 other downstream 438174 48926975 ~ 48927292 (+) True G2089906
TU2390650 other downstream 569204 49058005 ~ 49058895 (+) True G2089935
TU2390846 other downstream 823942 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 834368 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 844646 49333447 ~ 49334183 (+) True G2090103

Expression Profile