RNA id: XM_036965696.1


Basic Information

Item Value
RNA id XM_036965696.1
length 3071
RNA type mRNA
GC content 0.49
exon number 11
gene id trpc6b
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49089883 ~ 49186113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAACCGTCTACGGTAGACTGTTCTGTGGTCAGGGTACAGACGCGCTCATTCTGCGCTCAGCGTCAGTCCATTCCAAGAGTGGATTTAGGAGGTTTGTAGCGTCTTTGTCTGTGCGCTTCTGTTGATGATCAGCTGGGTTGAGATTGACAAGAAATGACTCACAGAAGACTGTATTTCAATGAAAGTGATTCAACAAAACGATGTTCTACCGAAGGAGATTCTGATAGAGATCATCCACCGTTGAAGACAGACTCATCTGCTAACAGTAGCGCAAACTGCCACGGACACGACAAGAGATGGATCAATGAGGACCGTCACACCATGCTACGACAGACCCTGGCCAAGACACGGAGACTGGGCATGCGGGGGCCGGCCTACATGTTCAGCGCCCGCTCAGCCAGCCTATCCCTGACCGAGGAGCGCTTCCTGGACGCGGCGGAGTACGGCAACATCCCCGGGGTCCGCAAAATGCTGGAGGAACTTCCTGAACTCAACGTCAACTGTGTGGACTACATGGGCCAGAATGCATTACAGCTGGCGGTGGCCAACGAGCATCTAGAGGTTACGGAGCTGTTACTGAAGAAGGATAATCTGGCCAGGATAGGGGATGCTCTACTGTTGGCAATCAGTAAAGGATACATTAGGATAGTGGAGGCAATATTGAGTCACAGGGCCTTCGCAGACACACGGAGGCTCGTCAACAGTCCTGGCCGAGCAGAGACACAAGACGACTTCTTCTCCTATGACGAGGATGGTACACGGTTTTCTCATGACATCACCCCCATCATCCTGGCCTCTCACTGCCATGAGTACGAGGTAGTACACATCCTCCTGAGGAAGGATGCCCGTATCGAGCGACCACACGACTACCTCTGTAAGTGTGGCACCTGCAGCTACCACCAGAAGCATGACTCGTTCAGCCACTCTCGGTCCCGTATCAACGCCTATAAAGGGCTGGCCAGCCCagcctacatgtctctctctagcAAAGACCCTGTGATGGCTGCTCTGGAGCTGAGCAACGAGCTGGCTGTCCTGGCTAACATCGAGAAGGAGTTTAAGAAAGATTACAAGGAACTGTCCGTGCAATGTGAAGACTTTGTGGTCGGACTGCTGGACCTGTGCCGTAACACGGAGGAGGTGGAGGCCATCTTGAATGGGGACATTGATGCCAGTGAAAACAATGAGCCACATGAAAGACCAAGTTTTATAAGACTAAAGCTCGCAATAAAATATGAACTGAAGAAGTTCATAGCCCATCCAAACTGTCAGCAGCAGCTCATGTCTATCTGGTACGAGAACCTGTCTGGACTGAGACAGCAGACCAACGTTGTCAAGTTTCTGGTAGTTCTGGGTGTAGCTGTTGGACTACCTGTCCTGGCTCTGCTCTACTGGGTGGCACCGACTTGCAAGCTGGGGAAGATAATGCGTGGTCCCTTCCTGAAGTTCGTGGCCCATGCAGCTTCCTTCACCATCTTCCTGGGCCTGCTGGTGATGAATGCAGCTGATCGCTTCCAGGGTACCAAACTGCTCCCTAACATGACCGTACAGGACCACCCCTCTCAGCTGTTCAGGATGACGACCACCCCCTTCACCTGGATGGAGATACTCATCATATCCTGGGTCATAGgAATGGTCTGGGCTGAGTGTAAGGAGATTTGGTCCCAGGGGGCTCGGGAATATCTTTCGGAGACATGGAATCTTCTAGACTTTGGAATGCTGAGCCTTTTCGTGACATCCTTCATCACTAGATTTATGGCGTTCTGGCATGCGTATTCAGCACAGAGCTACGTCAACAAGCACTATACCGACCTGTCCAACATTACCCTGGTCCCAGAGATAGAGTACTACAGACTGGcccgtAATAACTGGGTTCCCTCGGACCCCCAGATCATCTCAGAGGGTCTGTATTCCATTGCTGTGGTACTGAGCTTCTCTCGCATCGCCTACATCCTCCCAGCCAATGAGAGTTTCGGGCCCCTGCAGATATCTCTGGGACGCACGGTGAAAGATATCTTCAAGTTCATGGTGATCTTCATCATGGTTTTTGTGGCCTTCATGTTTGGAATGTTCAATCTCTACTCATACTACCTGGGAGCCAAGCAGAACGACGCCTTCACCACGATTGAGGAAAGTTTCAAGACGTTATTCTGGGCCATATTTGGCTTGTCCGAAGTCAAGTCAGTGAAGATCAACAATGGCCATAAATTTATCGAGAATATCGGCTATATCCTTTATGGGGTTTATAACGTCACCATGGTGATCGTCCTGCTCAACATGCTCATTGCCATGATCAATAACTCCTTCCAGGAAATAGAGgatgACGCTGATGTAGAGTGGAAATTTGCCCGGGCTAAGCTATGGTTCTCCTACTTTGAGGAAGGTGGGACATTACCTGTCCCCTTTAACCTGGTTCCTAGTCCCAAGTCAATCATTGCCCTGGTCCTGGGGCTAAGAGACCTCATGCTGAAGGCTCTCAACAGACACAAGAGCTGTCACAATGAGGATACAGAGCTCAATAAGGTGAACCTCACAATCATGcgcgctctctcacacacacacacacaGTTATCACCACAAGGCATTGCTTTACTTTACTCATTTCTATACAACTATCATGTGTTCCTCTTTTTTTTCCCTATTTCACAGAAGATAATGAAACGCCTCATCAAGAGATATGTGATGAAAGCACAGATCAATAAAGACAGTGAGGAAGTGAATGAAGGAGAGCTGAAGGAGATTAAACATGACATCTCTAGTTTACGCTACGAACTCCTGGAGCAGAAGAACCACAATACGGAGGAGTTAGCTGAGCTGATCCGGAGACTGGGGGAGAAGATACCTGCCGAGCAGCAGAGGCATCAGGGTCAGACATAGGTATATGTATTCTACATCGTCTAGGATCAATGATGAGTGAGCTGATCAGgaggagactgggagagaggacaCCTGCCGAACACCAACCACATACGCTGAACATATAAAACATCATACCTatttccatgacgtagactgagtccaggtgaaagttatcatcccttattgatgtcacttgttaaatccacttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390728 lncRNA upstream 11226 49078453 ~ 49078657 (+) True G2089983
TU2390652 lncRNA upstream 25425 49064090 ~ 49064458 (+) True G2089937
TU2390644 lncRNA upstream 37514 49052146 ~ 49052369 (+) True G2089931
TU2390643 lncRNA upstream 37836 49051765 ~ 49052047 (+) True G2089930
TU2390640 lncRNA upstream 44508 49045149 ~ 49045375 (+) True G2089927
TU2390815 lncRNA downstream 39352 49225465 ~ 49225698 (+) True G2090065
TU2390816 lncRNA downstream 40123 49226236 ~ 49226471 (+) True G2090066
TU2390828 lncRNA downstream 62794 49248907 ~ 49249491 (+) True G2090077
TU2390830 lncRNA downstream 64489 49250602 ~ 49250839 (+) True G2090079
TU2390836 lncRNA downstream 75947 49262060 ~ 49262439 (+) True G2090085
XM_036964717.1 mRNA upstream 315202 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 315202 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 465435 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 631444 48401253 ~ 48458439 (+) False nars2
XM_036964775.1 mRNA upstream 770798 47640597 ~ 48319085 (+) False tenm4
XM_036965366.1 mRNA downstream 15335 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 136900 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1279770 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1279804 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 1280952 50467065 ~ 50476608 (+) False LOC110508133
TU2390650 other upstream 30988 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 162591 48926975 ~ 48927292 (+) True G2089906
TU2389657 other upstream 634397 48432478 ~ 48455486 (+) True G2089124
TU2389529 other upstream 898521 48188209 ~ 48191362 (+) False G2089020
TU2389530 other upstream 898521 48188209 ~ 48191362 (+) False G2089020
TU2390846 other downstream 126630 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 137056 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 147334 49333447 ~ 49334183 (+) True G2090103
TU2391337 other downstream 599014 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 895950 50082063 ~ 50087691 (+) True G2090638

Expression Profile