RNA id: TU2390778


Basic Information

Item Value
RNA id TU2390778
length 314
lncRNA type sense_over
GC content 0.39
exon number 1
gene id trpc6b
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49089883 ~ 49186113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTCATGGTGATCTTCATCATGGTTTTTGTGGCCTTCATGTTTGGAATGTTCAATCTCTACTCATACTACCTGGGAGCCAAGCAGAACGACGCCTTCACCACGTGAGTTATGTAATTATAGAGGAAATGGATACACACAGTGCCGTCGGAAAGtgttcagagcccttgacttttaccgcattttattacgttacagccttattctaaaatggattaaatagttttttcccctcatcaatctacacacaatacctcataatgacatcacaataccccttaatgacatcacaatacctcataatgacatcacaat

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390776 lncRNA upstream 1905 49140770 ~ 49141054 (+) True G2090031
TU2390770 lncRNA upstream 19980 49122731 ~ 49122979 (+) True G2090025
TU2390755 lncRNA upstream 33289 49109427 ~ 49109670 (+) True G2090010
TU2390746 lncRNA upstream 43081 49099304 ~ 49099878 (+) True G2090001
TU2390728 lncRNA upstream 64302 49078453 ~ 49078657 (+) True G2089983
TU2390779 lncRNA downstream 4562 49147834 ~ 49153873 (+) True G2090034
TU2390781 lncRNA downstream 19692 49162964 ~ 49163165 (+) True G2090036
TU2390784 lncRNA downstream 24169 49167441 ~ 49169334 (+) True G2090037
TU2390815 lncRNA downstream 82193 49225465 ~ 49225698 (+) True G2090065
TU2390816 lncRNA downstream 82964 49226236 ~ 49226471 (+) True G2090066
XM_036964717.1 mRNA upstream 368278 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 368278 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 518511 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 684520 48401253 ~ 48458439 (+) False nars2
XM_036964776.1 mRNA upstream 823874 47640597 ~ 48319085 (+) True tenm4
XM_036965366.1 mRNA downstream 58176 49201448 ~ 49266635 (+) True pgr
XR_005040013.1 mRNA downstream 179741 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1322611 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1322645 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 1323793 50467065 ~ 50476608 (+) False LOC110508133
TU2390650 other upstream 84064 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 215667 48926975 ~ 48927292 (+) True G2089906
TU2389657 other upstream 687473 48432478 ~ 48455486 (+) True G2089124
TU2389530 other upstream 951597 48188209 ~ 48191362 (+) False G2089020
TU2390846 other downstream 169471 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 179897 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 190175 49333447 ~ 49334183 (+) True G2090103
TU2391337 other downstream 641855 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 938791 50082063 ~ 50087691 (+) True G2090638

Expression Profile