RNA id: XM_036965366.1


Basic Information

Item Value
RNA id XM_036965366.1
length 3592
RNA type mRNA
GC content 0.48
exon number 9
gene id pgr
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49201448 ~ 49266635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGCACCAAGAGACACCACCCACTCTAGTCTCCTCGCCGACTGACAGGGACTCTGACTGACTGTCGTCTTCGTGATTTCTGTAGCTTTGACAACAGAATGGAAAATGAACACACAACAGACAGGATGGACACAGCGAACACATTGAGCTCAGACGTCACAGACTCCAGTAAAAGAGTAAGTTATTTGATTGAGAAGTATAAAGATGTAGGATTTGGTCAGCCTCGGAAATTCTCTAAGGAGCCACAGTCTCAAGTCTGCATGTCCTCCGTAGTGCGTAGTTTTGGAAACGTTGGCACTTTGTGCGCTGCGCCTCCTGGCTCAAGCAACAACAGTACCATGTTCAAAGACTGTACGGTCAGAGATAACGCATCACTTATCAATAAAGCGTTTTATGACCGCTCTGACCCTGTGCGCTGGACAGAGGTGCGTGGTATAGAGGGAGTGAAGGATTCCACGTTACCGCAGCCGATCCCAACAGTAACTCATGAAAGTTTGCAGAGAGCGGCTACGAACATGATATCGACACCCAGTTCAACCACAGCCACCGGGGTCTGTAGGATCATCAAAGATGAGAAGGAGCCGTCACTAATCATGGAAACACCGTGTCCCGATTTTGACCTAACGGCCAATATCCCTACCCTCGAGAGCTGTTACGACAGCGAGAGGAAACAACAACAGTTAGGTTTTCTGGATGATTCCGCAGCGTCTTTCCCCACCTCCGCGCCTGGACAACAGCACCAACAAGTACTATTGGACTGTTCACCGAACTTTCTAGTCGACTTGAATCAGAACGACCAGATGTCGACGGTTCCCCAGGTCCGTGCAGACTCACGCGGTGTTCCCTTTCCTACTCATCCCGGTAAGGGCATGCTGAGTTTTGATGTAATGAGCAGTAACGGACAGGGTCCACAGCAGCATTTGATGATTTATAAGAGTGAAATGCCCAGATGGTCCATTCAGACCTCTCCTACTCATTCCTCGTTTTGGTGCCAGTCCAGCGGGGTCTCCGAGGACCAGTACCCACACCATGGCTACTCCTCCCCGGATGGAATTCACACCTCAGCCCTGCTCCAGAGGTCCCCAACCTATACAGGATATGGCGGTGTTCCACCCCAGAGACTATGTATGATCTGTGGAGATGAGGCCTCAGGGTGTCACTATGGGGTCCTCACATGTGGAAGCTGCAAAGTGTTCTTTAAACGAGCGGTCGAAGGACATCATAACTATCTCTGTGCCGGTCGAAATGACTGCATCGTGGATAAAATACGGAGAAAGAATTGTCCTGCGTGTCGCCTGAGGAAGTGCTACCAAGCTGGGATGATGCTCGGAGGGCGGAAGCTGAAGCGTTTTGGGGCCCTGAAGGCAGGTCCAGCCTTGATGTTCCAGGGGCCCTTATCAGCCCTGGGAGATGGTCTGGCCCCAGCCTTGATGTTCCAGGGGCCCTTGTCAGCCCTGGGGGATGGTCAGACCCTGGCCTCTCTACCCTGCATGCCTGGCCTCAACGAGCTGCAGCTCTCCCCTCAGATCATCAGCATTCTGGAGAGCATTGAGCCTGAGGTGGTGTACTCTGGCTATGACAACTCCCAGCCTGACAtgccacacctcctcctcaacaGTCTCAACAGACTGTGCGATAGACAGCTGTTGTGGATCGTCCGGTGGTCCAAGTCCCTGCCAGGGTTCCGTAGCCTCCACATCAACGACCAGATGACACTCATCCAATACTCCTGGATGAACCTAATGGTGTTCTCTCTGGGCTGGAGATCTTTCCAGAATGTCACCAGTGAATACTTATACTTCGCTCCTGATCTTATCCTTAGCCAGGATCGTATGAGGAGATCTCCCATATATGATCTGTGTCTGGCCATGCAGTTCATTCCTCAGGAGTTTACCAGCCTCCAAGTCACCAAAGAGGAGTTCCTCTGTATGAAAGCCATCATGATTCTCAACACTGtTCCATTGGAGGGTTTAAAGAGCCAGGCCCAGTTTGAGGAGATGAGACAGAACTACATTCGGGAGCTGACCAAGGCTATCCATCTGAAGGAGAGAGGCATGGTGGCCTCCTCTCAACGCTTCTATCATCTCACCAAGCTCATGGATGCCATGCATGAGATTGTGAAGAAAGTGAACCTGTACTGTCTTAGTACCTACATCCAGGCTGACGCCATGAAGGTTGAGTTCCCTGAAATGATGTCAGAGGTCATCTCCTCCCAGCTCCCCAAGGTCCTGGCCGGCATGGTCAAGACCCTCCTCTTCCACGCCAAGTGACCAATCACAGGAGACAACCAAACCTGCACCGCGCAAAGCACCATGGAAGAATAGAATATACCCAAAGAGCAAGAGTTGAATAAATATTTTATAAACGTCatcatatatcaaatcaaatatcGACCAAAATGTTATGTTGATTTGAAAATAGGTCTTTGTCCGGTGGGTGTATCATATCTTTGAAACTAAGACAATTTAAGTTAATCGTAAAGGTTTTGGGGAGGTGATATTTGGACCAAGTTAAACATGAAGGTTTTGGGGAGGTGATATTTGGACCAAGTTAAACATGAAGGTTTTGGGGAGGTGATATTTGGACTAAGTCAAAATGTGAAGATTTTGGGGGGGAATTAGTTGAGTTTATATTTGTGGCAGAATGAGTCCTTCTCCAAGGTCTGTTTGCCCTGTCTGAAGTCCAATAGTCCTGCCAGCAGGCAGATATGTCCTCCAGTCAGACCTCTTAGAACTGTGATTCCTTCTCCAAGGTCTGTCTGCCCTGTCTGAAGTCCAATAGTCCAGATATGTCCTCCAGTCAGACCTCTGTGGTGAATCCATCAAAGATACTGTAACGGTGCCTCCCTTCAATACACTCTTATCTTTTGAGGTGGTGGAATTTTATATATAGAAGTTGTGTTAGCATTTTTAATTTGTGAGAATTACTGTTTTGCTAGACTTGTAAGAGAGCTAGGTttacgtcccaaattgcaccctattcccaacagtgcactgcttttgaccagagtgcCATGggctctggttgaaagtagtgcactatgtagggaatagggtgctgtttgagacGCAGCCTTAAAACTGCTATACCAAGTTTTGCTTTTTGCGTTAGTTTTCAGTGACATACATGTCACACTCCCTGCTTCATGGCTGGGCAGGCATTTATATATCTCAAGTTACGCAAGTTACACAAAATACACAATGCCATTCTATTTCATGTACCATTAAATTACATAActactgtatttttttaaaggGAGCACAAGGGGAATGATGTTATTTCAATGCCATTGCTATTCGCAGAAATGTGGAAAAATAAATGTTCCATTGCTCTGCGATAAGGAAATACCATCTGAACCTCCTCCCCGATCCTCAAGATAAAGACATATAGAGCGAGAGACagataaaaagagagaaagaggagaggagaaataaagagagggaggagagcgatagtgggaggaaagagagaataagggaggaaaaagagagagaggagagagataaaggcaggaaaaagagagatgagagagagggagggaggagagagataaagagagagtagaggataaatagagaggaaggaaagga

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process

KEGG:

id description
K08556 PGR, NR3C3; progesterone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390784 lncRNA upstream 32114 49167441 ~ 49169334 (+) True G2090037
TU2390781 lncRNA upstream 38283 49162964 ~ 49163165 (+) True G2090036
TU2390779 lncRNA upstream 47575 49147834 ~ 49153873 (+) True G2090034
TU2390778 lncRNA upstream 58176 49142959 ~ 49143272 (+) True trpc6b
TU2390776 lncRNA upstream 60394 49140770 ~ 49141054 (+) True G2090031
TU2390848 lncRNA downstream 49993 49316628 ~ 49317091 (+) True G2090093
TU2390855 lncRNA downstream 55218 49321853 ~ 49322105 (+) True G2090100
TU2390857 lncRNA downstream 66528 49333163 ~ 49333394 (+) True G2090102
TU2390859 lncRNA downstream 67640 49334275 ~ 49334820 (+) True G2090104
TU2390860 lncRNA downstream 68253 49334888 ~ 49337253 (+) True G2090105
XM_036965696.1 mRNA upstream 15335 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 426767 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 426767 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 577000 48460449 ~ 48624448 (+) True gab2
XM_036965512.1 mRNA upstream 743009 48401253 ~ 48458439 (+) False nars2
XR_005040013.1 mRNA downstream 56378 49323013 ~ 49323866 (+) False LOC118944717
XM_036965521.1 mRNA downstream 1199248 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1199282 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 1200430 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 1200460 50467095 ~ 50476608 (+) True LOC110508133
TU2390650 other upstream 142553 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 274156 48926975 ~ 48927292 (+) True G2089906
TU2389657 other upstream 745962 48432478 ~ 48455486 (+) True G2089124
TU2389530 other upstream 1010086 48188209 ~ 48191362 (+) False G2089020
TU2390846 other downstream 46108 49312743 ~ 49316226 (+) True G2090091
TU2390856 other downstream 56534 49323169 ~ 49323603 (+) True LOC118944717
TU2390858 other downstream 66812 49333447 ~ 49334183 (+) True G2090103
TU2391337 other downstream 518492 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 815428 50082063 ~ 50087691 (+) True G2090638

Expression Profile