RNA id: TU2390856


Basic Information

Item Value
RNA id TU2390856
length 435
RNA type TUCP
GC content 0.42
exon number 1
gene id LOC118944717
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 49323013 ~ 49323866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTATGGGTTATGAAGGGTTTGTAAGACATCTACGTAGGTTTGTGGGTCTACATAGGTTTATGGGTTATGAAGGGTTTGTAAGGCAtctacgtaggtctatgggtCTACGTAGGTTTATGGGTTATGAAGGGTTTGTAAAGCAtctacgtaggtctatgggttatgaatggtttgtaaagcatctacgtaggtctatgggttatgaggggtttgtaaagcatctacgtaggtctatgggtTATGAAGGGTTTGTAAAGCATCTACGTAGGTTTATGGGtctacgtaggtctatgggttatgaagggtttgtaaagcatctacgtaggtctatgggttatgaagggtttgtaaagcatctacgtaggtctatgggtCTACGTAGGTTTATGGGTTATGAAGGGTTTGCAAGGCAtctacgtaggtctatgggtC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2390855 lncRNA upstream 1064 49321853 ~ 49322105 (+) True G2090100
TU2390848 lncRNA upstream 6078 49316628 ~ 49317091 (+) True G2090093
TU2390837 lncRNA upstream 60195 49262567 ~ 49262974 (+) True G2090086
TU2390836 lncRNA upstream 60730 49262060 ~ 49262439 (+) True G2090085
TU2390830 lncRNA upstream 72330 49250602 ~ 49250839 (+) True G2090079
TU2390857 lncRNA downstream 9560 49333163 ~ 49333394 (+) True G2090102
TU2390859 lncRNA downstream 10672 49334275 ~ 49334820 (+) True G2090104
TU2390860 lncRNA downstream 11285 49334888 ~ 49337253 (+) True G2090105
TU2390861 lncRNA downstream 14934 49338537 ~ 49338934 (+) True G2090106
TU2390863 lncRNA downstream 17294 49340897 ~ 49341159 (+) True G2090108
XM_036965366.1 mRNA upstream 56534 49201448 ~ 49266635 (+) True pgr
XM_036965696.1 mRNA upstream 137056 49089883 ~ 49186113 (+) False trpc6b
XM_036964717.1 mRNA upstream 548488 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964718.1 mRNA upstream 548488 48633372 ~ 48774681 (+) False zmp:0000001236
XM_036964907.1 mRNA upstream 698721 48460449 ~ 48624448 (+) True gab2
XM_036965521.1 mRNA downstream 1142280 50465883 ~ 50476608 (+) False LOC110508133
XM_036965522.1 mRNA downstream 1142314 50465917 ~ 50476608 (+) False LOC110508133
XM_036965524.1 mRNA downstream 1143462 50467065 ~ 50476608 (+) False LOC110508133
XM_036965523.1 mRNA downstream 1143492 50467095 ~ 50476608 (+) True LOC110508133
XM_036964625.1 mRNA downstream 1342116 50665719 ~ 50850459 (+) True LOC110507254
TU2390846 other upstream 6943 49312743 ~ 49316226 (+) True G2090091
TU2390650 other upstream 264274 49058005 ~ 49058895 (+) True G2089935
TU2390619 other upstream 395877 48926975 ~ 48927292 (+) True G2089906
TU2389657 other upstream 867683 48432478 ~ 48455486 (+) True G2089124
TU2389530 other upstream 1131807 48188209 ~ 48191362 (+) False G2089020
TU2390858 other downstream 9844 49333447 ~ 49334183 (+) True G2090103
TU2391337 other downstream 461524 49785127 ~ 49788805 (+) True G2090508
TU2391495 other downstream 758460 50082063 ~ 50087691 (+) True G2090638
TU2392024 other downstream 1028765 50352368 ~ 50353167 (+) True G2091093
TU2392994 other downstream 2046161 51369764 ~ 51370763 (+) False G2091895

Expression Profile