RNA id: TCONS_00057974


Basic Information

Item Value
RNA id TCONS_00057974
length 1337
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id XLOC_028360
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 99991 ~ 101377 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaAAAGTTcacttagtttatttaaaaaaacaaaaacaagatcaTCTGAATCATTACAACAGCTTATAGACCAGAGGAGGAGCGACGAGgagctgtacacacacacacacacacacacacacacacacacacactaacaacaaCTGGACATCATGGAGAAGCAGACTGATGAGGAGCAGACGATGattaacacacacgcacgcacacacacacacacacacacacacacacacagtgaggaTGCACCGCTCCTGTAAAGTGCAGAAGATGAGTCGCTGGTGTGAGCAGAACCACAGGAACACAGAGCATGGCATTACCCAGAAGCCCTTGCAGAGCAGGCCAGTAAAGAGCGGGAGATTTGGAGAAGCagttactgacacacacacacacacacgcacacacaagtttAGTGATAAAGTGAAGGCACAGACATGCGTAACCAAACACCCAGAGCAAGACTGGTGCATGCTGGGTAAtgtgggggaggggggggggggtctgtgCTGGTGAGTTTCCCTTTATGAACACTCAGAGGATCCAGAAGtgctacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaatgcatTATGGGAAATCTAAAGCTTAGACCGgagctctctctcacacacacacacacacgtgcgcggCTGCTCGTCCTCTGATAGCTTATAAATACAGGATATGTACAGTGTGCGGTATAAAAATAGCAGAGCTCTTCTGGCACTCATGTAGAAAAGTGGAAAACGGcggcaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaccgcTCAGGCACGAGTCGCCGCCGTGATTGTGTGTTACGCCAGCAGGTGGGCGGGAGGTGTGTGCTGATTGGCTCCTCCTCGTCTCTCatataaaacagtataaaaataagcGCGCCGCCGCGTCACAGTGTAGAGCCTGCAGGGGGCGCCGCCGCGCGGCTCAGGAACTATTTGGCATGGACACCACACGCGTGTGAGTCAGATTAAGgcagcgtgtgcgtgtgtgtgtgtgtgtgtgggtctgatAAATCTCTCTTCATCAGTGTCCACGTGTGGGTAACCGCGGCAACACTgtatagaaatatataaatatgctcTTCTCTTACTGTACAGCGCCGCCAGAGCCCTCAGCTGTCCTTCAGCGAGACACAGTCACTTATATATATGTACAGAGGCAGTGGGGGCGGGGCCTGGCGCGCAGGGGGCGGGGCTCAGGAGGAGTCTGTGC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0007498 mesoderm development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057973 lncRNA downstream 25383 73430 ~ 74608 (-) True XLOC_028359
TCONS_00057972 lncRNA downstream 27333 71463 ~ 72658 (-) True XLOC_028358
TCONS_00057971 lncRNA downstream 42891 56025 ~ 57100 (-) False XLOC_028357
TCONS_00057303 lncRNA downstream 87651 6163 ~ 12340 (-) True XLOC_028354
TCONS_00057304 lncRNA upstream 14945 116322 ~ 119194 (-) True XLOC_028362
TCONS_00057305 lncRNA upstream 33586 134963 ~ 137757 (-) True XLOC_028364
TCONS_00055106 lncRNA upstream 228394 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057975 lncRNA upstream 292174 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055110 lncRNA upstream 581584 682961 ~ 685433 (-) False XLOC_028374
TCONS_00055092 mRNA downstream 35288 57034 ~ 64703 (-) True XLOC_028357
TCONS_00055090 mRNA downstream 46621 48519 ~ 53370 (-) False XLOC_028356
TCONS_00055091 mRNA downstream 46621 49992 ~ 53370 (-) True XLOC_028356
TCONS_00055089 mRNA downstream 81780 17308 ~ 18211 (-) True XLOC_028355
TCONS_00055093 mRNA upstream 5910 107287 ~ 119689 (-) True XLOC_028361
TCONS_00055094 mRNA upstream 27320 128697 ~ 133492 (-) True XLOC_028363
TCONS_00055095 mRNA upstream 33035 134412 ~ 149334 (-) False XLOC_028364
TCONS_00055096 mRNA upstream 50129 151506 ~ 178510 (-) False XLOC_028365
TCONS_00055097 mRNA upstream 50680 152057 ~ 170120 (-) True XLOC_028365
TCONS_00055111 other upstream 581675 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 702770 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 835852 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1959147 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2573729 2675106 ~ 2686090 (-) False XLOC_028423

Expression Profile

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