RNA id: TCONS_00055103


Basic Information

Item Value
RNA id TCONS_00055103
length 3695
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_028369
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 269443 ~ 277081 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGAGAAAAGTGAGATCTGCATGTACTTCATCAAAGGACACTGCAAACACGGCGGCACGTGCAGGAGGGAGCACTCCATTCTGCCGTATAAATGGGAAGTTAAGGAGGGATCAGTGTGGAAAGCTCTTCCTGACAACGAGGCCATCGAGAAAGATTACTGTGATCCTACTAATatatacagCTCTGGGCGGTTCCCGGTGTGTTTCGACACCATGACGCAGGGCTGTGTGGCGGTGCGGCGTCTCTCCACGGTGTCCTCTGTCCTCCAGCCCTCCTTCATCCTGACCACCGAGTGGCTCTGGTTCTGGGAGGACGAGTTTGGAAACTGGATCCAGTACGCCAGCGCGGACGGCGGCCATAAGATATCCTCCATCACCAGTGCAGAGCTGGAGCAGAAATATCAGGCGGACCAGAGCGCAGTGCTGGAGTTCAGCGCCGGGTCACAGACGTACACGCTCAGCTTCCAGGACATGATCCAAACAAACAAGCAGTACAAAACCAAAAAAGTGATCAGACGCCGCCCCAAATTCGTCTCCGCCGCAGATGTGAAGACGATCAAGAGCACGAAACGAGCACCAATCAGCTTCAAGACTCTGCCGGAGCACTGGGACAAAGCGCTGACTCCTGAAACGGGATGCAAGAGAGTGCAGCTGACAAAAACCACAGCCGAATTCATCAAAATACAGGAGCTGTTCAACCGCACCATGCGGGGATTCACCATCCAGAATATCGAGAGGATCCAGAACAAAGCATTGTGGGAGGTGTTCCAGTGGCAGAAGGACTGCATGAAGAAGAACAGCAGAGGCAGAGATGTGTCCGAGAAGCAGCTCTTCCACGGCACCGACTCCAAATTCGTGGACACAATCTGCCTGAACAACTTTGACTGGAGGATCTGTGGAGTCAACGGGACCGCCTACGGGAAAGGCAGTTATTTTGCCAGGGATGCCAAATATTCTCACAGCTACACCAACAACTCGGGCACGCGCTCCATGTTCGTCTGCCGCATCCTGGTGGGCGACTACACCAAAGGAGACTCCAGCTACCTGCGGCCTCCGTCCAAAGATGGAGGAGACACCGTCTTCTATGACAGCTGTGTGAATGACGTCTGCGACCCGTCTATATTCGTGGTGTTCGAGAAGCACCAGATCTACCCGGAGTATTTAATCCAGTACAGAGACTCCAGCGAGTGGGCATCTCCTGCTGTACGGCCAGCGGTGACCACAACAAGAGCGGTTCCCGCCAGCATCAGGACCACGCCCTCGTATAACTCCTCCCACTTTACCTCATCAAACACCTCCTCCTCTGTTAAATCCTCCCATGTTGCCTCCTCAAACACCTCCTCCTGGGTTAACTCCTCCCCCTTTAACTCTTCCCCCAACACCGCCTCTTCATATAACTCGACCTCCTTTGCTTACTCAAACTCCGCCTCCACTACTAACTCCTCCCCCTTTAACTCCTCCCCCAACACCTCCTCCTATGTTCATCTATCTCGATCTGCTTCCGTGTATTCACCTCCGCCTCGAAAACCTGCAAAGGCAGAAAATTCCTGCGTGATCTCCTGAATGTGTAACACACTGCGTCCGAAATCACATACACTCGTGCTGCGTTTCAATTTGAACATGCTTAAATACACTTAAAGACTCTTAATAAAGTGTGTCCTATATAGTGTGAATAGCATCGGGATGTGCCACGTCCACCCTGatgtagggatgtaacaattcacTCGACAATTCAATCATATTCACGATTTTAATTTCATGATACAGTTTTTATACAAAGATTcagtttttataataaaatagaattgcATAGTGAATAAAAAGCTGGTCTTTTATTAGACTATTGCTGtacgtttatttaaaaacaaaccccAAACCCTCAAATAcgctacacaaataaaataaatctcctCACATGAACACAGTCAGACTCTTTCCATTTAAATACACTATATATGAAGCTAAGATGCAGCATGAGCAGTTGTTAATGTAGATTAGACTGTATAATTACACAATCTGAAGCAATAACAGAATGTTTTCACTTGTAGTTTAGTGAAACTGTTCTAATATATAAAATGGGAAGGAAACAGCAGCTGCAGACTCACTCTCTGCCAGCAGATGGTGCTGGTGAACAGCAGTGATGTAGTGTTTCCATGGTTACCGATGTAAATAAAGCAGCTGCGCAGATCAACACGACTGTAATATGCAGCGTTCATATTTAACAATGGGAAACTAGTGCTTTTATCACATCTTCATGCGCGCCATGAAGCATTCGCTagtgcaaatatgtctgataatccaTATCTTTTACGAACATTCATGAAAACTGTTATTTCTGCGCAAAATTTTGACGAGAAatttgcagatttatgcagaataattGTGGAAGTATCGCaactaaaaacataaaacatgaaataaatataatgactattattttattaattactacGCAAAGGCATTTGTTTTGTAAACGAAGTCTCTCGTATAATACAGCtactaaatgacagaaaatattactatacaaactgtattatataaacatttgcatattagtaataaaattattgaaattattataaaatctgaataaatatatacttaTGCACATTTACGCAAGTGAATAAATAGATGCATTGATCAGCtttaaaatctgcggaaatctgtgcGTGCATATTCGTGTGGGCCTACTTGCGTTATTAACTTGCTTTCATTCGTTTAGTTTTTTGTTATCGTGCTCTGATTCATTCGGCACTTGACTCGTCACTTATTTGAACAGTGTTTTAACCTGTTGTTGTTATCATTTcatcattatcacatgacctgtGCGCAACAGTTGCGTCGTTTTACTATCATTTATAAATGTCACGTATAGTAGTGCCATCCGTGTACTTCTAAAGTACTTTTTTTTACCAAACTATGAATTTAGATGTACTACTGgacttgcatactgtttttcacatactGCATATTAGGGAAGTATGTGGTTTTGGACGCACTACAAAGATGGAGAGAGCCAGATTAAACGTTCATATTGACAATCAGGTTGCATAAAATGGCATTATAGTAGTTTTGGTGATTTATACTCTGATTAAAAGTGCAATGAAACCAACAGATCCTCACTTTTGTACCGAGTGCATCAAAAGCCTTTCCAAAAAAGAAGCagtttataaaatgttataatcAATAAACTAAAGCAAACATCAccagactacttatttaaagcACAGAAGTAGATGAACATCAGACAAAAAGACAACGGTTGTGCTTTACTGAGGGGAAAACTACAATCCCACAAAGCACATTAAGAAGACCTGAGGAATACTGATTTATAGTTGATTATTTTATAGAAGCGTCACACTTCAAATTCAGTGcaacatatatatttacatacaccGAGTGTTGATTTGATCATTTACAGGGCTTCTAGGAGTGGGTGGAGCTAAGGATCTGTTTTATTCGGAGTCTCTGATTGGTGGGTTTTCTGtgcagcatcatgggtaatgtagtcttGCTGCATGTATTACACTGTTGTTTAGAGAAAATCGTCTGAACCGATTGGTTATCCAATGGGGGAAATGATGAAGCTTTTACACAATAAAATGTTTCGTTGTTGTTGATTGGATGGTGAAATGTGGGCGTGGCTTAAATAACTGCATGGACACATGAGTTTTGACGTTTTCTTgaaatattaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141210-7 Predicted to enable NAD+ ADP-ribosyltransferase activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000166174

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057305 lncRNA downstream 131686 134963 ~ 137757 (-) True XLOC_028364
TCONS_00057304 lncRNA downstream 150249 116322 ~ 119194 (-) True XLOC_028362
TCONS_00057974 lncRNA downstream 168066 99991 ~ 101377 (-) True XLOC_028360
TCONS_00057973 lncRNA downstream 194835 73430 ~ 74608 (-) True XLOC_028359
TCONS_00057972 lncRNA downstream 196785 71463 ~ 72658 (-) True XLOC_028358
TCONS_00055106 lncRNA upstream 52690 329771 ~ 330713 (-) True XLOC_028371
TCONS_00057975 lncRNA upstream 116470 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055110 lncRNA upstream 405880 682961 ~ 685433 (-) False XLOC_028374
TCONS_00055112 lncRNA upstream 424531 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA upstream 446749 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055102 mRNA downstream 28706 233812 ~ 240737 (-) True XLOC_028368
TCONS_00055101 mRNA downstream 57729 190547 ~ 211714 (-) True XLOC_028367
TCONS_00055100 mRNA downstream 75681 184863 ~ 193762 (-) True XLOC_028366
TCONS_00055099 mRNA downstream 77707 184863 ~ 191736 (-) False XLOC_028366
TCONS_00055098 mRNA downstream 77707 184863 ~ 191736 (-) False XLOC_028366
TCONS_00055104 mRNA upstream 9344 286425 ~ 287425 (-) True XLOC_028370
TCONS_00055105 mRNA upstream 47947 325028 ~ 330748 (-) False XLOC_028371
TCONS_00055107 mRNA upstream 109354 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA upstream 110062 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055109 mRNA upstream 399629 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055111 other upstream 405971 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 527066 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 660148 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1783443 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2398025 2675106 ~ 2686090 (-) False XLOC_028423

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000068_00937975_00948500.mRNA True 4158 mRNA 0.45 18 CI01000068 936838 ~ 948500 (+)