RNA id: TCONS_00055106


Basic Information

Item Value
RNA id TCONS_00055106
length 550
lncRNA type retained_intron
GC content 0.37
exon number 3
gene id XLOC_028371
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 325028 ~ 330748 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGGCCTCCATGGCGAATTTTAGAACCCTTCGCGTCCTGTCAAAGATCTTTCACGGACACTTCACAGCGGCTTCAGCAGTCCAGCATCACACAGCGTGTCCACGtctgtctgtctgtctatctatctatctatctatctatctagtctgtctgtctgtctgtctgtctgtctgtctatctatctagtcTGTCTGTCTATAGGAAAATACCATAATTCATAGCTCCGAATAgtgatagataaaaaaaaatgtatatgcaaAATGCTTATGGGGGGGTTAAAAAACAGGCAGGGGTGATATAAAAGTTAATAATGAATTGAATTTAGGTAAGCTATGCTAATaacacatcattaaaaaaaacataacctTATATTCTGTGCTCAACATGCAAGATTATAAGTGTATGGCATCAGTCAAAACAATGTtgtcttaacaataaataaacagaaaagacCTTGGattcatgaattaaaaaaaaacttgaccggaaatgtaaataaacagataCTGAAGTGTTAAAACTGCATGTgatgtggtgtttgtgtgtgtg

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005763 mitochondrial small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040914-39 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Predicted to be active in mitochondrion. Is expressed in visceral fat. Orthologous to human MRPS10 (mitochondrial ribosomal protein S10).

Ensembl:

ensembl_id ENSDART00000149933

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057305 lncRNA downstream 192014 134963 ~ 137757 (-) True XLOC_028364
TCONS_00057304 lncRNA downstream 210577 116322 ~ 119194 (-) True XLOC_028362
TCONS_00057974 lncRNA downstream 228394 99991 ~ 101377 (-) True XLOC_028360
TCONS_00057973 lncRNA downstream 255163 73430 ~ 74608 (-) True XLOC_028359
TCONS_00057972 lncRNA downstream 257113 71463 ~ 72658 (-) True XLOC_028358
TCONS_00057975 lncRNA upstream 62838 393551 ~ 396819 (-) True XLOC_028373
TCONS_00055110 lncRNA upstream 352248 682961 ~ 685433 (-) False XLOC_028374
TCONS_00055112 lncRNA upstream 370899 701612 ~ 734347 (-) True XLOC_028375
TCONS_00057306 lncRNA upstream 393117 723830 ~ 732484 (-) True XLOC_028376
TCONS_00055114 lncRNA upstream 420577 751290 ~ 753073 (-) True XLOC_028377
TCONS_00055104 mRNA downstream 42346 286425 ~ 287425 (-) True XLOC_028370
TCONS_00055103 mRNA downstream 52690 269443 ~ 277081 (-) True XLOC_028369
TCONS_00055102 mRNA downstream 89034 233812 ~ 240737 (-) True XLOC_028368
TCONS_00055101 mRNA downstream 118057 190547 ~ 211714 (-) True XLOC_028367
TCONS_00055100 mRNA downstream 136009 184863 ~ 193762 (-) True XLOC_028366
TCONS_00055107 mRNA upstream 55722 386435 ~ 390442 (-) False XLOC_028372
TCONS_00055108 mRNA upstream 56430 387143 ~ 390431 (-) True XLOC_028372
TCONS_00055109 mRNA upstream 345997 676710 ~ 685412 (-) False XLOC_028374
TCONS_00055113 mRNA upstream 406826 737539 ~ 760560 (-) False XLOC_028377
TCONS_00055115 mRNA upstream 433387 764100 ~ 779796 (-) False XLOC_028378
TCONS_00055111 other upstream 352339 683052 ~ 685419 (-) True XLOC_028374
TCONS_00055123 other upstream 473434 804147 ~ 808453 (-) True XLOC_028380
TCONS_00055131 other upstream 606516 937229 ~ 948842 (-) True XLOC_028386
TCONS_00055166 other upstream 1729811 2060524 ~ 2162724 (-) False XLOC_028412
TCONS_00055185 other upstream 2344393 2675106 ~ 2686090 (-) False XLOC_028423

Expression Profile

//